Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00565 ATGGGGAAACGAACGGCGAAAAGTTCGAGATCCCAAACCTTACCGTCATCACCCTCGCATTCTTTCTCTTCATCTTCATCCTCTGATTTCGAATTCACCATCTCTGTTTCGCCTCGTCAAGCTTCCACCGCGCTCTGTCCCGCCGATGAGCTCTTTTACAAAGGTCAGTTGCTTCCTCTCCATCTCTCCCCTCGTCTCTCCATGGTCAGAACGCTCATTCTCGCTTCCTCTAGTACGTCGTCTTCTTCCGACACTAACAGTACCACCGCTTCGCGCGATTCCACCGGAAGTTCCACTGAGTCTCACTCCTCCTTCAGCAGCGACGTCGTGCTTCTCGCCGATTGTGATTCTTCCAGACCTAGCTCCGTCACAGAGGACGATGAATTCAGAGTTCGATTCGGTCTCAACACGGCCAAAAATCACAACAACTCCAATCCGATTAAAAAGAGCAAATACTTCTCGCTATCGAGATTTTCATCCGTGTTCAGAAAAGAATCGACGAAGAATAATCCAGAGCCTGAAACGGTATCTGGATCGCACGTCAAGAAAATTAGTTCCTCTGCGAAGGAAGTTTTCAGGAAGTATTTGAACAAAGTTAAGCCGTTATACGGAAAAATTTCACAGAAACAGCAACAGCAGGAATGGAAGACGAAGACGGATAGATCTGGTAAAGTGGATAAATTATCAGAAATGGACTTTTCAAGCAATAACTCTGGGAAAGAAACTGGATCGGGAGCATTATCACACTCATTCTCCGGTAATTTGAGATATCCGAGAAGAAGAAATATTGCGTCGAGTTGTCCGTCGTCGATTAGGTCATCGCCAAGCCATTCCGGCATTCTATCGTCTCGGACTGGGTTATCGAGCATGTATCCAACTAATAGAATCGGAACGACGACGAACTACAGCAGCAGCAGCATGTCGTCAATGGAGGAATTGCAGAGTGCGATTCAAGGTGCAATCGCTCACTGCAAAAACTCCATGGTGGAAAGTAAGAGGAGGACGACGATGAGTAACGAGATTTGA 1026 46.78 MGKRTAKSSRSQTLPSSPSHSFSSSSSSDFEFTISVSPRQASTALCPADELFYKGQLLPLHLSPRLSMVRTLILASSSTSSSSDTNSTTASRDSTGSSTESHSSFSSDVVLLADCDSSRPSSVTEDDEFRVRFGLNTAKNHNNSNPIKKSKYFSLSRFSSVFRKESTKNNPEPETVSGSHVKKISSSAKEVFRKYLNKVKPLYGKISQKQQQQEWKTKTDRSGKVDKLSEMDFSSNNSGKETGSGALSHSFSGNLRYPRRRNIASSCPSSIRSSPSHSGILSSRTGLSSMYPTNRIGTTTNYSSSSMSSMEELQSAIQGAIAHCKNSMVESKRRTTMSNEI 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6847752 6848777 - ClCG06G006020.1 Cla06g00565 274757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00565 341 MobiDBLite consensus disorder prediction 265 286 - -
Cla06g00565 341 MobiDBLite consensus disorder prediction 214 228 - -
Cla06g00565 341 PANTHER MEMBRANE-ASSOCIATED KINASE REGULATOR 1-RELATED 1 332 - -
Cla06g00565 341 MobiDBLite consensus disorder prediction 229 251 - -
Cla06g00565 341 MobiDBLite consensus disorder prediction 206 253 - -
Cla06g00565 341 MobiDBLite consensus disorder prediction 77 103 - -
Cla06g00565 341 MobiDBLite consensus disorder prediction 1 28 - -
Cla06g00565 341 PANTHER MEMBRANE-ASSOCIATED KINASE REGULATOR 4-RELATED 1 332 IPR039620 GO:0005886|GO:0019210
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00565 - - - cpep:111779344 477.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00565 Cla-Chr6:6847752 Cla10g01974 Cla-Chr10:35585897 1.12E-10 dispersed
Cla05g00561 Cla-Chr5:5131363 Cla06g00565 Cla-Chr6:6847752 9.83E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g466 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00565 Cam06g0605 Cec06g0605 Cco06g0610 Clacu06g0591 Cmu06g0586 Cre06g1352 . Cone15ag0822 . Cone4ag0228 . . . . . . . Bda13g00133 . . . . . . . . . . . Cpe12g00208 . Bhi12g01826 . . Lac12g1767 . . . . . . . . . . Lsi09g01336 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002276 3 2 2 1 3 2 3 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00565 Cla_Chr06 FPKM 0.0 0.0 0.0 0.183934 0.669364 1.415504 0.978174 0.118618 0.0 0.0