Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00566 ATGGCTCGTGTTCGAAATTTCAGTTCTCAAGGAGGGATGGTTAATGATGATTACTGGGCCACCCTGAATCGATATGATGTCAGAAACCACCATCAGAAGACAAGTAGGAGCAGTTATTATGATTATGGCTATAGTAGCAACCATTTTGAATTCTTGGGGCAGTATAAAGAGCAGCTTGATAGGTCTATTTATGCAAGGCCTGATACTTTGAACTCCATCAAGTCTCATAACCCTCAGTCTTTTAAGAGGAGGAAGTTTTCTGCTTCACGTTGGGAGGATAGTGGGAGGTATCATTGGCAGGCAAGGACATATGATAATGGACCTTCAATCTATAGCAATTTGGTCCACCCTCCTCCAAGATCCAACAATGATGTCTCTACATCTTCCAGCTGTAAACGAGATCGCACAATAATGGAAGACGATGAGCCTTTTTTTATGTCCAGAGATGAGATTGAGAGATGTTCACCTTCAAGAAAAGATGGTATTGACACAATACGTGAAACACATCTGCGGTACACGTACTGTGCCTTCCTTCAGAGTCTTGGTTTGCAGCTTGAGTTACCTCAGACTACTATTGGCACTGCAATGATTCTATGCCATCGGTTTTTTGTTCGAAGGTCACATGCTTGTCATGATAGATTTTTGATTGCCACATCTGCACTCTTCCTTGCTGCAAAATCAGAGGAGACACCACGACCATTGAACAACGTCTTGCGAGCTTCATGTGAAATTCTGCACAAACAGGATTTTAATGTCTTATCTTACATGCTCCCTGTTGATTGGTTTGAGCAATATCGTGAAAGAGTAACTGAGGCTGAGCAATTGATACTGACTACTCTGAACTTTGAACTCAACGTACAACATCCCTATGCTCCTCTTATGTCTGTTCTTAATAAGATAGGTCTTTCACAGTCGATCTTGGTGAATCTTGCACTGAACTTGATAAGTGAAGGGAATCTTTCTGGATTGTCTAGTCTATTTAGTAAGCATGCCCTTGCCATTGTGAAAAAAGGGCCTGCTCATGAGCTTGGATCTGCTATCCATTGTCTTTATAACCTAGAGAACCGCCTGCCAATGATTTTGTTTTCGTTCTTATGTCCCTATGATGGATGGTCAATACTATTAGACATTGCCATCCTATTTAGTAATGGACCCAGATGGCTGAGGACCTCACTCTGGCTTCAGTTTAAACCCCACCAGATAGCTGCTGGAGCTGCATATCTGTCTGCCAAGCTATTGAATATGGACTTTGCTCCTTATCAAAATATCTTGCAAGAGTTCCAAGCAACGCCAGCTATTCTCCAAGGTATCTTGAAGAACTTCTGA 1326 42.01 MARVRNFSSQGGMVNDDYWATLNRYDVRNHHQKTSRSSYYDYGYSSNHFEFLGQYKEQLDRSIYARPDTLNSIKSHNPQSFKRRKFSASRWEDSGRYHWQARTYDNGPSIYSNLVHPPPRSNNDVSTSSSCKRDRTIMEDDEPFFMSRDEIERCSPSRKDGIDTIRETHLRYTYCAFLQSLGLQLELPQTTIGTAMILCHRFFVRRSHACHDRFLIATSALFLAAKSEETPRPLNNVLRASCEILHKQDFNVLSYMLPVDWFEQYRERVTEAEQLILTTLNFELNVQHPYAPLMSVLNKIGLSQSILVNLALNLISEGNLSGLSSLFSKHALAIVKKGPAHELGSAIHCLYNLENRLPMILFSFLCPYDGWSILLDIAILFSNGPRWLRTSLWLQFKPHQIAAGAAYLSAKLLNMDFAPYQNILQEFQATPAILQGILKNF 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6862280 6869298 + ClCG06G006030.2 Cla06g00566 274758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00566 441 PANTHER CYCLIN-T1-4-LIKE ISOFORM X1 71 439 - -
Cla06g00566 441 SUPERFAMILY Cyclin-like 372 427 IPR036915 -
Cla06g00566 441 Gene3D - 286 441 - -
Cla06g00566 441 SUPERFAMILY Cyclin-like 144 286 IPR036915 -
Cla06g00566 441 Pfam Cyclin, N-terminal domain 158 285 IPR006671 -
Cla06g00566 441 Gene3D - 133 284 - -
Cla06g00566 441 CDD CYCLIN 170 248 IPR013763 -
Cla06g00566 441 PANTHER CYCLIN 71 439 IPR043198 GO:0006357|GO:0016538
Cla06g00566 441 SMART cyclin_7 176 278 IPR013763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00566 K15188 CCNT; cyclin T - csv:101216477 622.468
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00566 Cla-Chr6:6862280 Cla08g01465 Cla-Chr8:27569075 6.46E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g467 . Blo12g00321 Bda03g00895 . Bpe04g00840 . Bma04g00793 . Cmo08g01129 Cmo17g00236 . . . . . . . . . . . . . . Cla06g00566 Cam06g0606 Cec06g0606 Cco06g0612 Clacu06g0592 Cmu06g0587 Cre06g1353 Cone14ag0837 . . . . . . . . . . . . . . . . . . Cma08g01155 Cma17g00251 Car08g01033 Car17g00225 Cpe12g00207 . Bhi12g01732 . . Lac12g2301 . . . . . . . . . . Lsi09g01335 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006517 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00566 Cla_Chr06 FPKM 11.923077 12.230763 16.695583 14.565747 14.915903 18.736032 14.418332 26.684874 20.68177 26.242844