Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00567 ATGTACCTACAAAATGGGATGGACAGAGCAAAAAACATGTGGTCTCGTCTTCCGAACACCGACGAAAATGAGGATGACCTTGTTAGTATCTTGAAGAAGAACGATGGGGGTGGCGTCGAAAGCCTTGATTATGAGGTCATCGAGAATTATGCTTACTGGGATGAGCAGGCGCAAAGAGGGAAATTATTTGTTGGCTATAGCGTGGCAGTTAAGTGGCTGTATGCTTTGTTCATAGGCATTGGCACAGGATTGGCTGCAGTTTTCATTAATATGGCTGTTGAGAACTTTGCTGGCTGGAAATTTTCATTGACATTTGCCCTAATTCAAAAGTCATATGTGGCTGGCTTTATAGTATACTTAGCAATCAACTTGGGTCTAGTGTTTTCATCTGTATATATAGTCACACACTTTGCTCCTGCAGCAGCTGGATCTGGCATACCTGAAATCAAGGGCTATTTGAATGGAATTGACATACACGGTGTCCTTTTCTTCAGAACCTTAATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGATTGGCTTTAGGCAAAGAAGGGCCTCTTGTACATACAGGCGCCTGCATTGCTTCTTTGTTAGGACAAGGTGGATCTGCTAAATATCATCTAAATTCCAGGTGGTTACAAGTGTTCAAGAGTGACCGGGATCGTCGTGATCTTGTAACCTGTGGGTGTGCAGCAGGAGTTGCTGCAGCTTTTAGAGCTCCAGTTGGTGGTGTATTATTTGCACTGGAAGAAGGATCAATTGGAAAAACTAACCCAATCTATATTGCCGTTCAGTTATCTTCACACATTATGAGTTGTTTTCCTTTGTCTCTGCTTGAGTGTGTAGAGGTCTTGTGGTCTGATGAGTATAATATTATTGATTTGAGAAACTTGCATATGTGGAAGAGTCAACTTTTGTGGCGTGTGTTTTTCACTTCTGCTGTGGTGGCAGTTGTGGTGCGGGCAGCTATGGGATGGTGTAAGAGTGGGAAGTGTGGACATTTTGGTTCTGGTGGTTTCATAATATGGGACATATCAGATGGCCAAGAGGACTATTCTTTTGGGGAGTTGTTGCCCATGACTGTGATTGGGGTTATTGGAGGCTTATTAGGAGCATTATTCAACCAGCTTACTCTTTACATTACTTATTGGCGACGAAACCATTTGCACAAGAAGGGGAACCGAGTCAAGATCATTGAGGCTTGTCTCATCTCAGTATTGACATCAATTATTTCCTTCGGACTACCACTTCTAAGGCAATGTACTCCATGCCCCAAACCTGATCCTGAATTAGGAAATGAATGCCCAAGGCCTCCAGGAACATATGGGAATTATGTTAATTTCTATTGCAGTAAGGACAATGAATACAATGACCTTGCAACCATCTTCTTTAACACCCAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACAATGCATGAATTCAGTGCGCAGAGTTTATTGACCTTTCTGGTTATGTTTTATACTTTAGCTGTCGTGACATTTGGCACTGCAGTTCCTGCTGGTCAATTTGTTCCTGGTATAATGATTGGATCTACGTATGGACGTTTGGTTGGAAAGTTTGTTGTTAGTTTCTACAAGAAGCCCAACATTGAAGAGGGAACTGCTGGAGAACATGCGGGATATGATGATTTTGGTCAGCCATTTTTCTCTTCCAAATTAAGCTGTGGATATGCCTTGTTGGGTGCTGCATCTTTTCTGGGAGGCTCTATGCGAATGACAGTGTCTCTTTGTGTCATCATGGTTGAAATTTCAAACAATTTGAAATTTTTACCACTCATCATGCTTGTACTTCTGATGTCCAAGGCTGTTGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCCCAGTTGAGGGGTATTCCATTACTGGAATCAAGACCAAAGTACCAGATGCGGAAAATTACAGCAAAGGAAGCGTGTGGAAAAAGGGTTGTCTCCTTCCCCCGTGTTGTTAAGGTTGCTGATGTTGTTAGTATTTTACGGAGCAACCGACATAATGGCTTTCCTGTGATTGATTACTCTCGAAATGGAGAAACGCGTGTCATTGGACTAATGCTTAGAAGTTACTTATTAGGACTTCTGCAGTCCAAAGTAGATTTTCAGCACAGTCCCGTGCCTTCTGATCCAAGAGGATCTATATCAAGCAGGCACAATTTCAGTGAATTTGTGAAACCTGCTTCCAGTAAAGGAATTTCTATTGATGATATAAATCTTAGTTCAGAGGACTTGGAAATGTACATCGATCTACTTCCATATCTGAATCCATCTCCATATATTGTCCCAGAGGATATGTCTCTGACAAAGGTCTATAATCTTTTCCGGCAACTAGGTCTGAGACACGCATTTGTTGTTCCCCGGCCATCAAATGTGGTTGGTTTGATTACTCGAAAGGATTTGTTGATAGAGGATAGCGAAGATTCGGATGCAATGGAACTACAATCGACTAGTGTAAGAGCTCGTCGTCCAGATAGAAGAGTACATACAAGGAATGGGGATGTAGAGAGCCCACTTCTTAATGGACTTCTGGTCAATAACACAGATGGCTAA 2586 42.15 MYLQNGMDRAKNMWSRLPNTDENEDDLVSILKKNDGGGVESLDYEVIENYAYWDEQAQRGKLFVGYSVAVKWLYALFIGIGTGLAAVFINMAVENFAGWKFSLTFALIQKSYVAGFIVYLAINLGLVFSSVYIVTHFAPAAAGSGIPEIKGYLNGIDIHGVLFFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSAKYHLNSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEGSIGKTNPIYIAVQLSSHIMSCFPLSLLECVEVLWSDEYNIIDLRNLHMWKSQLLWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFGELLPMTVIGVIGGLLGALFNQLTLYITYWRRNHLHKKGNRVKIIEACLISVLTSIISFGLPLLRQCTPCPKPDPELGNECPRPPGTYGNYVNFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTMHEFSAQSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVSFYKKPNIEEGTAGEHAGYDDFGQPFFSSKLSCGYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLRGIPLLESRPKYQMRKITAKEACGKRVVSFPRVVKVADVVSILRSNRHNGFPVIDYSRNGETRVIGLMLRSYLLGLLQSKVDFQHSPVPSDPRGSISSRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPYLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPSNVVGLITRKDLLIEDSEDSDAMELQSTSVRARRPDRRVHTRNGDVESPLLNGLLVNNTDG 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6873535 6881777 + ClCG06G006050.2 Cla06g00567 274759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00567 861 PRINTS Chloride channel signature 234 253 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla06g00567 861 PRINTS Chloride channel signature 170 189 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla06g00567 861 PRINTS Chloride channel signature 139 156 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla06g00567 861 PRINTS Plant CLC chloride channel signature 462 478 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cla06g00567 861 PRINTS Plant CLC chloride channel signature 45 53 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cla06g00567 861 Pfam Voltage gated chloride channel 127 264 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla06g00567 861 Pfam Voltage gated chloride channel 303 616 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla06g00567 861 SUPERFAMILY CBS-domain pair 641 813 IPR046342 -
Cla06g00567 861 CDD ClC_6_like 40 636 - -
Cla06g00567 861 Gene3D Clc chloride channel 66 637 - -
Cla06g00567 861 Pfam CBS domain 767 813 IPR000644 -
Cla06g00567 861 SUPERFAMILY Clc chloride channel 49 273 IPR014743 -
Cla06g00567 861 SMART cbs_1 769 817 IPR000644 -
Cla06g00567 861 SMART cbs_1 656 708 IPR000644 -
Cla06g00567 861 ProSiteProfiles CBS domain profile. 766 822 IPR000644 -
Cla06g00567 861 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 3 254 - -
Cla06g00567 861 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 303 853 - -
Cla06g00567 861 CDD CBS_pair_voltage-gated_CLC_euk_bac 657 813 - -
Cla06g00567 861 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 303 853 - -
Cla06g00567 861 SUPERFAMILY Clc chloride channel 302 638 IPR014743 -
Cla06g00567 861 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 3 254 - -
Cla06g00567 861 Gene3D - 638 820 IPR046342 -
Cla06g00567 861 ProSiteProfiles CBS domain profile. 653 713 IPR000644 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00567 Cla-Chr6:6873535 Cla10g00694 Cla-Chr10:10693947 1.16E-175 dispersed
Cla06g00567 Cla-Chr6:6873535 Cla11g00303 Cla-Chr11:3533373 3.17E-162 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00567 K05016 - csv:101215989 1476.84