Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00571 ATGGGTTCTCGGAAATTCCGCGACCGTGACTCAGAGTTTCCTTCCCGGTCTTTAGTGGAAGCAGGGCCGTGGGATGAGGACGATCGGACGGTGAAAACAGGGCGCGCTGATCGACACGGAGGGGCCTGTTTGGGGAAAAAGAATCGCATCGTATTTGATATGGATAGGAACAGAGAAGCTAGAAGGACGACGACGAACATGGCGGCCTCTAACGGGCTCTCTAGACGGAGATACAGGAGTGGTAGTCTTCGTGACTCTCCAGAGGATGATGGACCACTTGAGTTACAGGATACCGTGAGATTGAGAGATCGAGGCAGCGGGAAGAAAGATCGTGATCGAGATAGGGATAGAGACAGAGATCGAGACCGTGATAGAGATCGGCTTAGCAGGAGCAAGAGGAGAAGAGCTGATAGATTGATTCATGGCGGTAGCAATAGGGAAGATGGAGGGGAAGATAGTTCTGAAGAGAGTGTAAACGACGAAGAGGATGAGGAAGACGATGATGGTGGTGGTGGTGCTGCTGGTGGGGGTGGAGCATCCGTCAGAATGCTTCCGCCGAATCCGGCGGGGATTTTGAACCATCGTAAGAGTTATCCACCGGCGAAGAGTTTTAGAGCAGCACCGTCGTGGAAAGCCGCCGATGAAATGATTGGTGTGTCGGTGCCGAGAAAAGCCCGGTCAGCCTCGACTAAGCGGTCTCATGAATGTTGGCCAGCAGCGGCGGGCAGCGGAACGGTCACTGAAGCCATTCACCGGCAGGCTTCAACATCGCCAGTGAGGCCAAGTCTTACACCAATGGTGACGCTTCAGCCCCCAGCCTCGCCTTCTTCTTCCAATGCTTCGGTGAGGAAGAAGCTGAAGCAAACCGGACCTAAACTCCGACCGCTCAAATCCTCCTCAAAGCCATCATCCATGGCTCAAGACGAGATCGAGATCGAGATTGCTGAAGTATTGTACGGTATGATGAGACAACCTCAAGCTCCTCCCAAACAAGAACCTTCTACTACTGATTCGATGAAGTTCGATCCGAAATCAACCACTGATGCGAAATCCAGAGTTTCATCGCCGATTTCCAACTCTTCTTCTGCTTTGCCTACCCCTTCCACTTTGCCTCAAAATTCCAGTTCTTCTGTCACTCCGATATCAGCCACCGCACCCAAGAGGAAAAGACCGCGTCCTGTGAAGTATGACGATGAGAACGCCGCTACTTTCAGCCTTCGGAATAGCCCCATTTCGTCAACAGCCAAACCGGAGGCCGATCAACCCACAAACGCCGAGATCCCTTCATCAAATGTGGAAAAAGTTGCAGGATCTGCAGTTGAAAATGGTGGAGTTTCAAACGAATCTGGTAATTCTCAGGCCTTACCACCAACATCAGAGTCCCATCTAGAATCTATGAAGGTGGAAACAGCCAGTGCCATGTCCAATTCTAAGCCATTGACTGAAGAATCAGAAGGTAAAGATTTGGGTACAAGCAAGGAAGAACCCCAATCTCCCCTGAAGGAATCAAATGGCCCTAGATTGGAAGATAAGCGAGAGGATATGACAGCGACTAAATCAAATTCATCAACCTTCGATGTTGAGAACCAGCGGGATGATAAGTACAAGATAGATCTGATGGCTCCTCCACCATTACGAGCTTCTCCAGAAAGAGATGGTGAGATTGATTTTGTGGCCGTAGATGCTAAACCTATGGTCATAGATGCAGACACGGAAATGAAGCCTCTGATAAAGGAAGAAGATAAAGGAACAATCAGACTTGGGTCTAAAGAGGTGGTGAATGTGGAGTCCAAAGTTATACCAGCTGAAGAAGCTGATTCAAAGAAACCCATTGTTTGCAAAGATAATAGAAATATTGACCTTCAGCATGATTTAGAGAAGACGACTGATAGAGATGGTGCCACTGCAAATGTAGGTGCCAACAAGCTCCACCAGCATGTTCCGAAACAGCCGCTGCAACCTGGCTCGGAAAAACCTGGATCTGCCGTACAAGCGAGCTCTCTTCCTTTGCCCATGTCTTTACCTGGCTGGCCAAGTGGGCTGCCTCCTATGGGGTACGGTCGCCATAATTTGTTGCGTGTAATTGTGGGATTCTCTTACAATGCTTATGGTGTTTTTCTTTCGTTCTACCCCATTGGAATGACACTGTCATTTTTTAGCAGATATGTGGCACCACTACCAGGAGTTGTGTCTGTTGATGGAAGCGCTTTGCCTACTGCTGCTATGCAGCCGCCAAATTTGCTTTTTCCTCAACCCCGGCCAAAGAGATGTGCTACACATTTCTACGTTGCTCGGAATATATTGTATCACCAGCAAATTGCGCGGATGAATCCGTTTTGGCCAGCAGCAGCAGGTTCTGCTTCCTTGTTTGGGCCCAAGCATGGTACTCACAGCATTGTGCCCTCTGCAGATTTGCAAGGAAGTCTTCCAAAAAGTGGGATAAATGCAATGCAGGATAAGGGCCAGGGCCTTGGAATGTTCACGGGTCATTCCGGAAAGGATAGGGGCTCTCAAGCTGTTAATGCTGTGGATGCCTCTCAGAGAAAGCAAATTTTGCTTCAGCAAGCGCTGCCCCCGGGAGCACCTAGTAATATCCTGCATGGCCCTGCTTTCCTTCTGCCACTGAGTCAGCAACAGGCAGCTGTAGCTACTTCTGTTCGGCCTGTTTCTGTAAAGTCTCCTCCTCCTAGTGGGAATGCCAACGGCAGTGCGGCTTCAAATGCTTCTAATCCTGCGTCTGTTAGTACCTCAGCTGCTGCAGCAATTGCTGCACCAGCAATGAGTTTCAACTATTCGGGTGTGCCTGGCAATGAACCACAGTATTTAGCCATTTTGCAGAACAATGGATATACATACCCAATTCCAGCACATGTTGGGGCACCGCCTGCATATAGAGGAACCCACGCTCATTCGATGCCTTTTTTCAATGGGTCATTTTATTCTTCACAAATGCTTCATCCTTCGCAGCTTCAGCAGCAACCGCCACCTCAGTCTCATCCTAATCAACAGGGACTTCAAAATGCTAATACTGTGAATGGTTCCTCATCTTCTCAGAAGAATGTATCTAATCAGCAGCAGAGGCCACATGGGAGCAGTGTCAGTGGGAACTTTCAAGGCTTTCCTGCATCCAGAAATCAGCCATCTCAATCACAGCAGCCACAGCAGCAGCAGAACCATGGTTCTCATCAAACAAGGCAACTTGAGTCTGAGATTGGTGGTGAAGATAGCCCGTCGACTGCTGATAGTCGAGTGAATCTTGCTAATCTGAGTGTCTATGGTCCAAATTTTCCGATGCCAATGCATACTCCTAATTTTGCTTTGATGACTCCTGCATCAATGGCGGCCGCAGGTGGGGCACCTAATGACAAGAAACAGCAGCCCCAACAACAGTCACAGGGTTCAAAGAGTCTGGAACAATCTCAAACTATTCCTTTGTCTTTTGCTCCTCCCAATGGTGCGCCCTCTGCTCCTGGACTTGACCTTTCATCCATATCACCAAATCATCCTATTTTCCAAAGTCTTCCTGAGATCACCAGGCAAGGGTATCATCAGATTATGGCTGCTGCTGCTGCCGCACAGGTTGCTCAGCAGAAAAAGAATTATCGTGTAGCCGAAGAAGGAAAAACCACACACTCATCTGTTGGAGAGGATGAGAGAAAAAACATGTCTGTGAAAGCTCCTCCAACTGTTGGTCAGTCCATTGCCTTCTCTAGATCTGATTTAGCCGAGACATCACTTTCTACAATACCAGCTGGGGCCGCCGTTGTTGACAGCTCTGCTAGAACTCTAAACCTTGGTTCTACTGCTAGAGCTTCAGGTTCCGTTATGCCCTCTGGGATGGGCACTGTAAACATGTGTAGTTCTCAGCATCCACTGCAGCGAAATCAGCAGCAGCAACAACAACAGATAATGCTTCAAAAGCAACAGCAATATGCAGCTGCAGCTGCAGCAGCAAGGACCAAAACATCAACAACAAGTAATGGCAGTGTTTATGCTGAGCACCCTCCTGCGTCGATGGCAGCAAAGTTTCCTAATGCATTGTCTTCTTTTTCTCAAAATCTTGTCCAAAGTAACAGCAATAGTCCTGCTCAATCTCCTCAGTGGAAAAATTCTGTAAGAACCACCTCTTCTCAGGTTCAAACCCCCCCTCTGTCTTCATCAAATACATCATCTATCAAAAATCTTCCCCAACAGCCCCGTCCACAGCCAAACCACTCTCAGATTTCTTTTGCAGCTAGCTCAAAATCTACAACTCAATCGCAAGGGCAGCAACCTGCAAGCAGTAATCAGTCTCCATCACCTGGAATGATTGGTTCACCAACTAATTCTTCAATCTCAAAGGGTGCTGGTGGAAGCCCGCGAACTGCTACCTCCGGTTCTATGGGCCACAAAGTTGGTCAATCATCTTCCTTATCGTTGCAGCAGACAAAGAATCCTTCATCTATGCCCCCCCAGAAGTCATCTCCTGTTGGTGGAAGGAATGTTACATCAATTCTTGGCAATAATCAAATGACATCTTCAAGTTCTGGAAATAAATTATCCCAACAGTCGCAGCAGCAGCAGCAACAGCAACATTTTGCGAAGCAAACATTGCAGCAAGCACAGTTACTCTTCCCTTACATGCAGCAAGTTTCCCATTCAAGTAGCACTGCAACTGTTTCACCTTCAAGTGGTTATTATCTTCCAAGGCGACGTCCTGAACAGCAATCACAATCGCAGGGCTCAGGTGGAACATCCTCCAATGGAATGGTATCCCTATGCCACCCTGTTACACTTGGAGGCAGCAGCACTACCGATCCTTCAAAAGCTGTTGCTGCTGCTGCTGCCGTGGCTAACAATATGAAAGGTGGTGGCTTACCTACACAAGCCATTCTCCATCCTGCTCAGTTTACTGCTGCACAGTCGTCTGGTAATCCTCATCAACTTGTACCTGCAGGTTTTCCTTACGTGCATTCTGCTGCAGTGCAAGTGAAATCTACAGAGCAAAAACAACCTGCGGGTGGGTAG 5007 48.29 MGSRKFRDRDSEFPSRSLVEAGPWDEDDRTVKTGRADRHGGACLGKKNRIVFDMDRNREARRTTTNMAASNGLSRRRYRSGSLRDSPEDDGPLELQDTVRLRDRGSGKKDRDRDRDRDRDRDRDRDRLSRSKRRRADRLIHGGSNREDGGEDSSEESVNDEEDEEDDDGGGGAAGGGGASVRMLPPNPAGILNHRKSYPPAKSFRAAPSWKAADEMIGVSVPRKARSASTKRSHECWPAAAGSGTVTEAIHRQASTSPVRPSLTPMVTLQPPASPSSSNASVRKKLKQTGPKLRPLKSSSKPSSMAQDEIEIEIAEVLYGMMRQPQAPPKQEPSTTDSMKFDPKSTTDAKSRVSSPISNSSSALPTPSTLPQNSSSSVTPISATAPKRKRPRPVKYDDENAATFSLRNSPISSTAKPEADQPTNAEIPSSNVEKVAGSAVENGGVSNESGNSQALPPTSESHLESMKVETASAMSNSKPLTEESEGKDLGTSKEEPQSPLKESNGPRLEDKREDMTATKSNSSTFDVENQRDDKYKIDLMAPPPLRASPERDGEIDFVAVDAKPMVIDADTEMKPLIKEEDKGTIRLGSKEVVNVESKVIPAEEADSKKPIVCKDNRNIDLQHDLEKTTDRDGATANVGANKLHQHVPKQPLQPGSEKPGSAVQASSLPLPMSLPGWPSGLPPMGYGRHNLLRVIVGFSYNAYGVFLSFYPIGMTLSFFSRYVAPLPGVVSVDGSALPTAAMQPPNLLFPQPRPKRCATHFYVARNILYHQQIARMNPFWPAAAGSASLFGPKHGTHSIVPSADLQGSLPKSGINAMQDKGQGLGMFTGHSGKDRGSQAVNAVDASQRKQILLQQALPPGAPSNILHGPAFLLPLSQQQAAVATSVRPVSVKSPPPSGNANGSAASNASNPASVSTSAAAAIAAPAMSFNYSGVPGNEPQYLAILQNNGYTYPIPAHVGAPPAYRGTHAHSMPFFNGSFYSSQMLHPSQLQQQPPPQSHPNQQGLQNANTVNGSSSSQKNVSNQQQRPHGSSVSGNFQGFPASRNQPSQSQQPQQQQNHGSHQTRQLESEIGGEDSPSTADSRVNLANLSVYGPNFPMPMHTPNFALMTPASMAAAGGAPNDKKQQPQQQSQGSKSLEQSQTIPLSFAPPNGAPSAPGLDLSSISPNHPIFQSLPEITRQGYHQIMAAAAAAQVAQQKKNYRVAEEGKTTHSSVGEDERKNMSVKAPPTVGQSIAFSRSDLAETSLSTIPAGAAVVDSSARTLNLGSTARASGSVMPSGMGTVNMCSSQHPLQRNQQQQQQQIMLQKQQQYAAAAAAARTKTSTTSNGSVYAEHPPASMAAKFPNALSSFSQNLVQSNSNSPAQSPQWKNSVRTTSSQVQTPPLSSSNTSSIKNLPQQPRPQPNHSQISFAASSKSTTQSQGQQPASSNQSPSPGMIGSPTNSSISKGAGGSPRTATSGSMGHKVGQSSSLSLQQTKNPSSMPPQKSSPVGGRNVTSILGNNQMTSSSSGNKLSQQSQQQQQQQHFAKQTLQQAQLLFPYMQQVSHSSSTATVSPSSGYYLPRRRPEQQSQSQGSGGTSSNGMVSLCHPVTLGGSSTTDPSKAVAAAAAVANNMKGGGLPTQAILHPAQFTAAQSSGNPHQLVPAGFPYVHSAAVQVKSTEQKQPAGG 1668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6927363 6936087 + ClCG06G006080.2 Cla06g00571 274763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00571 1668 MobiDBLite consensus disorder prediction 1122 1148 - -
Cla06g00571 1668 MobiDBLite consensus disorder prediction 225 534 - -
Cla06g00571 1668 MobiDBLite consensus disorder prediction 1354 1527 - -
Cla06g00571 1668 MobiDBLite consensus disorder prediction 78 152 - -
Cla06g00571 1668 MobiDBLite consensus disorder prediction 328 383 - -
Cla06g00571 1668 MobiDBLite consensus disorder prediction 442 480 - -
Cla06g00571 1668 MobiDBLite consensus disorder prediction 153 170 - -
Cla06g00571 1668 MobiDBLite consensus disorder prediction 248 285 - -
Cla06g00571 1668 MobiDBLite consensus disorder prediction 886 911 - -
Cla06g00571 1668 MobiDBLite consensus disorder prediction 1 43 - -
Cla06g00571 1668 MobiDBLite consensus disorder prediction 55 209 - -
Cla06g00571 1668 MobiDBLite consensus disorder prediction 402 431 - -
Cla06g00571 1668 MobiDBLite consensus disorder prediction 985 1081 - -
Cla06g00571 1668 MobiDBLite consensus disorder prediction 481 495 - -
Cla06g00571 1668 MobiDBLite consensus disorder prediction 643 665 - -
Cla06g00571 1668 MobiDBLite consensus disorder prediction 1206 1223 - -
Cla06g00571 1668 MobiDBLite consensus disorder prediction 63 77 - -
Cla06g00571 1668 PANTHER PROTEIN TIME FOR COFFEE 54 1664 IPR039317 GO:0042752
Cla06g00571 1668 MobiDBLite consensus disorder prediction 1114 1164 - -
Cla06g00571 1668 MobiDBLite consensus disorder prediction 1548 1598 - -
Cla06g00571 1668 MobiDBLite consensus disorder prediction 1206 1226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00571 - - - csv:101215514 2410.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00571 Cla-Chr6:6927363 Cla09g00650 Cla-Chr9:6191367 9.60E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g474 Blo01g00128 Blo12g00324 . Bda08g00233 Bpe04g00837 . Bma04g00791 Bma05g01112 Cmo08g01126 Cmo17g00232 . . . . . . . . . . . . . . Cla06g00571 Cam06g0610 Cec06g0611 Cco06g0617 Clacu06g0597 . Cre06g1358 Cone14ag0842 . . . . . . . . . . . Bpe05g00906 . . . . . . Cma08g01150 Cma17g00246 Car08g01031 Car17g00220 Cpe12g00204 Cpe17g00142 Bhi12g01725 . . Lac12g2296 . . . . . . . . . . Lsi09g01331 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003917 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00571 Cla_Chr06 FPKM 17.613533 18.370146 20.705671 20.146114 22.338121 22.7239 23.450253 24.451059 22.612518 24.729776