Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00580 ATGGCCATTTCAGTTCGAGTAATATTTCTTCTCCTCCTTTGCTCTTTCATCCCTTCCATAGTTTCTTATCACCCTTTAGACCCTCTTTCACCAAATGAAATACAGGCAGCTGCCGCCATTATCAAAGCTTCCAAGCTCGGCCAATCGTCCAGGCTCACGTTCCACTACGTCGGCTTAGACGAGCCGAGCAAACCCGCCGTCCTTGCATGGCTATCAAACCCTTACAAACATCAACCGCTGCCTCGTCGGGCTTTCGCCATAGTCAGAGCCAACGGCCAAAGTCATGAACTCGTCGTTGACTTGAACACCAATCTTACCATCTCCTACGAATATTCCAATATTTCTATTGAATATCAACATTTTAATCTTCCCTCTCAGAAAATCTACACAGGCACGGGTTATCCAATGCTAAATTTAGAGGAGCAAGAAACAGCGATCGAACTTGCAGTTAAACACCCGGCTGCAGTCGCATCGATAAAGAAGAGGGGGCTAAAAATTTCAGAGGTGGTGGCTTCAACTTTCACCATAGGATGGTATGGGGAAGAGAAGACGAAGAGAGTGATTAAGGTATTGTATTTTTACAAAGAAGGGTCTCCCAATATTTGGGTGAGGCCCATTGAAGGGATTGAAGCTCTTGTGGATCTCGATATATTGAAGGTTGTTGAGTATAGAGATCGCCATATTTTTCCTGTTCCTAAAGCTCAGGCCACTGATTACAGAGCCTCTATGGTTAAGCCGCCGTACGTGGCGGAGACGAAGCCCATCACTCTTTACCAACCGGATGGCCCTACCTTCAACGTTATTGGCCATGAAATAAGGTGGGCAAACTGGGAATTTCACATGAGCTTCGACATTCGAGTAGGAATTATAATATCATCAGCATCGATCGCCGACATTGACCAACGTCGGCGACGACAAGTGCTATATAAAGCCCAAATCTCAGAGCTCTTTGTCCCTTACCAAGACCCAACCGAGGAATGGTTTTACCGGACATTTTTCGACGCCGGCGAGTTTGGATTGGGCCTTTCTGCCGTCGAGCTCGAACCCTTCACTGATTGTCCTGCAAACGCCGTGTTTTTCGATGGCTTCTACGCCGGACAAGATGGACTTCCCGTCAAAATTCCTAATGTTGTTTGCGTCTTCGAGAAGTACGCTGGCGGCGTTGCTTGGCGTCACACTGAACTCGAAATTCCTGGTGAAGACATTAGAGAAGTGCGACGAGATGTGAGCTTAGTGATAAGGATGGTTTCTATGGTGGGAAACTATGACTATATCTTTGATTGGGAGTTCAAGACAAGTGGTTCTATCAAATTTAAGGTAGGGTTAACAGGCATTCTAGAAGGGAAGTCCACAATGTACACTCGCACAAAGGATATCAAAGAAGACATATTTGGCACTTTAGTAGCACCAAACACAGTGGCTGTAAACCATGACCATTTCCTCACTTATTATTTAGATCTCGACATTGACGGTCAACAAAACTCCTTCCTCAAAGCCAAATTAAAGAAGAAGAAGAACCACCGCGATACGCTGAGGAAGAGCTACTGGACCGTCGTGAAGGAGACGGCCAAAACAGAACTCGACGCCAGACTCCGGCTAATGGAGCCAGCTGAGTATTTGATTGTCAATCAAAATAAAGAGACTGAGGTTGGTAACCAAGTTGGGTACCGGCTGATTCCAGGGCCTGATGCTTCACCACTGCTGGCGGCAAATGATTACCCGCAGATCCGAGGAGCCTTGTCTGATTATAACATCTGGGTTACTCCTTATAATAGATCTGAGATTTGGGCTGGTGGACTTTATTCTGATCGGAGCCGAGGTGATGACACTCTAGAAATTTGGACGGATAGGAATAGGGATATCTACAACAAGGACATAGTTTTATGGCACACCATTGGATTTCATCATAACCCTGTTCAAGAGGAATTTCCAATAATGCCCACACTTACCGGTGGCTTCGAACTCCGGCCGGCAAATTTCTTCGACCGGAATCCCATATTGCTCATGAGGGCTCCGGAGGCTGTCAAGGTTCCGCCGCCTTGCAACGCCACCGTTCCCTAA 2061 46.58 MAISVRVIFLLLLCSFIPSIVSYHPLDPLSPNEIQAAAAIIKASKLGQSSRLTFHYVGLDEPSKPAVLAWLSNPYKHQPLPRRAFAIVRANGQSHELVVDLNTNLTISYEYSNISIEYQHFNLPSQKIYTGTGYPMLNLEEQETAIELAVKHPAAVASIKKRGLKISEVVASTFTIGWYGEEKTKRVIKVLYFYKEGSPNIWVRPIEGIEALVDLDILKVVEYRDRHIFPVPKAQATDYRASMVKPPYVAETKPITLYQPDGPTFNVIGHEIRWANWEFHMSFDIRVGIIISSASIADIDQRRRRQVLYKAQISELFVPYQDPTEEWFYRTFFDAGEFGLGLSAVELEPFTDCPANAVFFDGFYAGQDGLPVKIPNVVCVFEKYAGGVAWRHTELEIPGEDIREVRRDVSLVIRMVSMVGNYDYIFDWEFKTSGSIKFKVGLTGILEGKSTMYTRTKDIKEDIFGTLVAPNTVAVNHDHFLTYYLDLDIDGQQNSFLKAKLKKKKNHRDTLRKSYWTVVKETAKTELDARLRLMEPAEYLIVNQNKETEVGNQVGYRLIPGPDASPLLAANDYPQIRGALSDYNIWVTPYNRSEIWAGGLYSDRSRGDDTLEIWTDRNRDIYNKDIVLWHTIGFHHNPVQEEFPIMPTLTGGFELRPANFFDRNPILLMRAPEAVKVPPPCNATVP 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7072481 7079400 + ClCG06G006160.1 Cla06g00580 274772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00580 686 Pfam Copper amine oxidase, N3 domain 135 231 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00580 686 SUPERFAMILY Amine oxidase N-terminal region 23 111 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00580 686 Pfam Copper amine oxidase, N2 domain 24 107 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00580 686 Pfam Copper amine oxidase, enzyme domain 256 666 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00580 686 PANTHER AMINE OXIDASE 7 674 - -
Cla06g00580 686 PANTHER COPPER AMINE OXIDASE 7 674 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00580 686 Gene3D - 136 229 - -
Cla06g00580 686 SUPERFAMILY Amine oxidase N-terminal region 133 240 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00580 686 Gene3D - 23 115 - -
Cla06g00580 686 SUPERFAMILY Amine oxidase catalytic domain 243 667 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00580 686 Gene3D Copper amine oxidase, catalytic domain 247 677 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00580 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - csv:101222468 847.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00580 Cla-Chr6:7072481 Cla06g01692 Cla-Chr6:30522821 1.62E-80 dispersed
Cla06g00578 Cla-Chr6:7038827 Cla06g00580 Cla-Chr6:7072481 0 proximal
Cla06g00579 Cla-Chr6:7066256 Cla06g00580 Cla-Chr6:7072481 1.77E-10 tandem
Cla06g00580 Cla-Chr6:7072481 Cla06g00581 Cla-Chr6:7081883 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g485 . Blo12g00327 . . . . . . . . . . . . . . . . . . . . . . Cla06g00580 Cam06g0618 Cec06g0620 Cco06g0626 Clacu06g0605 Cmu06g0598 Cre06g1366 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01714 . . Lac12g2284 Hepe03g0193 . Lcy13g0278 . . . . . . . Lsi09g01324 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00580 Cla_Chr06 FPKM 34.590771 38.546108 1.113295 1.703448 72.692841 73.262283 77.238762 0.109859 0.0 0.0