Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00581 ATGGCAAAACTTCTCTACTTCCTCCCACTCATCATTTATCTTTTCTCCGCCGTCCCCGTGGCCGCCGACCGCCACCCTCTCGACCCACTCTCTCCGCCCGAGTTCAAACTCATCCGATCACTCATTATCAATTCCAACCCCTCCACCAACTTCACCTTCCAGTACGTAGCCCTCGCCGACCCCACCAAGCAATCCGTCCTTTCATGGCTCTCAAACCCCAAAACTCCGCCGCCTCCCCGCCGCGCCATCGCCACCGTCCGTTTCAACAAAGCCACACACGAGATCCTCATAGACCTACACAAAAAAACCGTAATATCGAACCGGGTCTACTCCGGTCCGGGGTACGCGCCGTACACATTCGAGGAGCAGTTCGCGGCCGCCGCTCTGCCGCCATCCCACCCACCGTTCGTGGCGGCGATGAAAAAAAGAGGGCTGAAAATGGAAGAGGTAGTTTGTGCGTGTTTTAGCGTTGGATGGTTTGGGGAAAAAAGGAAAGTGGAGAAGAGGATTGCGAAAGTACAGTGCTATTATTTGGATGGGAGTGTGAATCTGTACATGAGGCCTGTGGAAGGAGTGACGGTGACCGTTGATCTTGATGAGATGAAGATTCTTGGGTTTCGTGATAGATATGTGGTTCCAATTCCCAAGGTGGACGGGACTGAGTACAGAGAATCAAAGCTCAATCCGCCGTTTTTGCCGCCTTTGAACGGAATTAAGATGCTGCAGCCCGACGGCCCTAGCTTCAAAGTCAATGCCCACTCCATTAGCAGTTGGGCGAACTGGAATTTACACGTAAGCTTGGATGAGAGAGCAGGGCCAATGATATCGCTAGCATCCATCTATGACATGGAAAAGAAAGAACACCGGCAAGTAATGTACAGAGGGTTCATATCGGAGCTGTTCGTGCCGTACATGGATTTAAACGAAGAATGGTACTACCGGACGTTTTTCGACGCCGGCGAGTACGGCTTCGGCCAATGTGCAGTGCCGTTACAGCCGCTGAGAGACTGCCCGGAAAATGCGGTGTTTATGGACACGTACATGGCCGCCGGAGATGGCAGGCCGGTGAAGATGCCCAACACTTTTTGTATATTTGAGCGCCACGCCGGTGATATCATGTGGCGCCACACGGAGGGCACCATTCCCAATACACTTATTAGCGAGACGAGGGCGGAAGTGAGCTTAGTGGTGAGGATGGTGGCAGCTGTGGGCAACTATGACTACATTGTTGACTGGGAATTTAAGCAGAGTGGCTCCATTATTGCTAATGTTGGGTTAACTGGTTTGCTAGAAGTTAGGGCATCAAAGTACACTCACAATGACCAAATAAAGGAGGAAGTCTACGGCCCTTTGTTAGCCGAGAATACGATCGGCGTCCGCCATGATCACTTCCTCATCTACCATCTCGATCTCGACATCGACGGCGGCGCCAACTCCTTCGTCAAATCCAACCTCCGCACTGTCCGATCGCCGGACCCGGATTCCCCTAGGCGTAGCTATTGGACGGTCGTCGCCGAGACGGCCAAAACAGAGGCCGATGCGAGGATCAAATTCGGCCTCCAGGAGGCCGAATTGGCAGTCGTTAATCCCAATCGGAGGACCAGAATGGGGAATCCCGTCGGCTACCGTCTGATTCCGAAGTCGGCGGCGGGTCCTCTTTTGAGTGCTGATGATTACCCTCAAATTAGGGGAGCGTTCTCCAATTACAATGTCTGGGTTACACCGTATAATAGCTCCGAGAAATGGGCTTCTGGACTCTTCACTGATCAGAGCCGTGGAGACGATACCTTGGCTACTTGGAGTCTCAGGGACAGGGAGATAGAGAACAAGGACATAGTCATGTGGTACACCATGGGGTTTCATCATGTGCCTTGCCAAGAAGACTTCCCATTAATGCCAACTCTGAGCAGTGGGTTTGAGCTAAGACCAACCAATTTCTTTGAGAGCAATCCTGTGCTAAAAGTCACCCCACCCCAGAATTTTCGTCTCCATTATCCAATAAAGAAGCATGCCGGTTTCATCATAAAGAGAAAGATCAGTAAACCAACGACAAAAAGCTGTTTGAATTTTCCCTCCTCCTCCATGACTCTTCTTCTGTTTCTTCTTGTAGTCCTTCACCTTCATTTCTGTACGGCGGCGCCGCCCTTTTTCCATCCGCTTGACCCTCTAAACCCGGTGGAGCTTGACCAAATTAGGCTCGCAGTACAGAAATCCCACCTTGGAAAGCTTCCAAATCTCACATTTCACTTCGTTGACTTGGAAGAACCAGATAAGAAGGATGTTCTTTCCTGGCTTTCTTCCGGTGAAGAAAACAACCCCCTCCACCGCCTGCCTCGCCATGGCAAGGTTGTGGTCCGGGCGGCGGATTCCACCCACGAGCTACTTGTAGACCTTGCCACACGCTCGGTTAAGTCTGACCAAGTCTATAGTGGCCTTGGCTATCCTCCTCTCACTTTCGTGGAGCTTGTCCAAGCCAGCAAATTGCCTCTCAATTTCCCCAATTTCAAGGATTCCATTCAGAGGAGAGGCTTGAACTTGTCTCATGTTTCTTGCATCCCGTTTACAGTAGGCTGGTACGGCGAAAAAACAACCAAAAGGCTTCTAAAAGTTGCGTGCTTTTACAGAGAAGGAACCATCAATGTGTTCTCCAGGCCAATCGAAGGCATCATCACACTAATCGACGTTGATTCCATGAAAATCATCAACTACTCCGACAGATTCACCGCCCCTTTGCCGCAATCAGAAGGCACCGATTACCAATCAAAGAAAACAGAGCCCAAATCTTCCAATTGCAAGGCGGCGAAAAGAAGATTCACCATCGAAGGCCATCAAGTGAAATGGGAAAACTGGGTCTTCCATGTGGGATTCAACGCCAGAGCCGGAATTATTATCTCAACAGCCTCCATTTTCGACGATGAAAAGAAGAAATTCAGACGAGTGCTTTACAGAGGACACATTTCAGAGACGTTTGTGCCGTATATGGATCCGACGAACGAATGGTACTTCAGAACCTTTATGGACATCGGAGAGTTTGGATTTGGGCGGGCGGCGGACACTCTGCAGCCGCTGGTTGACTGTCCGGAAACTGCCGAGTATCTAGACGGCTACATGGCCGGCGCCGACGGGCGACCGCAGAAAGTATCGAGAGCCATTTGTATCTTTGAACGCCATTCAGGAGATGTCTTATGGAGGCATACCGAGATTAATATTCCTGGAAAAGTGATTAGACGTGGGGAACCTGAGATTAGTTTGGTGGTTAGGATGGTAGCAACTGTTGGGAATTATGATTATGTTCTTGACTGGGAATTCAAAAGAAGTGGCTCTATTAAAATGGGGGTTGCTTTAACAGGGCTTTTGGAGGTTAAAGCCACACCGTACAGAAATACCATGGATGTAACCCAACAAACATACGGAACTTTAATCGCCGACAACACAATCGCCGTCAACCACGACCACTACCTAACCTACTACCTCGACCTCGACGTTGACGGCACCGCCAACTCCTTCGTCAAAGCCAAGCTGATAACGGCAACAACGGCGAACGTCAACGCCACGTCACCCAGGAAAAGTTACTGGAAAATTATCCGAGAAACCATTGAAACCGAAACTGAAGCTAAACTTCAGCTCGGCTCCGGCCCAGCTGAGCTCTTGTTCGTAAACCCCAATAAGAAGACAAAGATTGGGAATCCGGTTGGTTACCGGCTCATCACCGGCCAACCGGTTAATTCTTTATTGGCCGACGATGATTACCCTCAGATCAGAGCGGCTTACACCAAGTACCCGTTGTGGGTGACTCCTTATAACAAGTCGGAGAGATGGCCGGCTGGATTTTACGCCGATCGGAGCCGTGGTGATGATGGCTTAGCCGTCTGGGCCAAAAGGAATAGAAGAATTGATAATAGAGATATAGTTTTATGGTACACGGTGGGTTTCCATCACAGCCCTTGCCAGGAAGAATTCCCGGCAATGGCCGCCCTCCACGGCGGCTTCGAGCTCCGACCAGCCAATTATTTTGATAGAAACCCTATCCTTAAATGA 4038 50.22 MAKLLYFLPLIIYLFSAVPVAADRHPLDPLSPPEFKLIRSLIINSNPSTNFTFQYVALADPTKQSVLSWLSNPKTPPPPRRAIATVRFNKATHEILIDLHKKTVISNRVYSGPGYAPYTFEEQFAAAALPPSHPPFVAAMKKRGLKMEEVVCACFSVGWFGEKRKVEKRIAKVQCYYLDGSVNLYMRPVEGVTVTVDLDEMKILGFRDRYVVPIPKVDGTEYRESKLNPPFLPPLNGIKMLQPDGPSFKVNAHSISSWANWNLHVSLDERAGPMISLASIYDMEKKEHRQVMYRGFISELFVPYMDLNEEWYYRTFFDAGEYGFGQCAVPLQPLRDCPENAVFMDTYMAAGDGRPVKMPNTFCIFERHAGDIMWRHTEGTIPNTLISETRAEVSLVVRMVAAVGNYDYIVDWEFKQSGSIIANVGLTGLLEVRASKYTHNDQIKEEVYGPLLAENTIGVRHDHFLIYHLDLDIDGGANSFVKSNLRTVRSPDPDSPRRSYWTVVAETAKTEADARIKFGLQEAELAVVNPNRRTRMGNPVGYRLIPKSAAGPLLSADDYPQIRGAFSNYNVWVTPYNSSEKWASGLFTDQSRGDDTLATWSLRDREIENKDIVMWYTMGFHHVPCQEDFPLMPTLSSGFELRPTNFFESNPVLKVTPPQNFRLHYPIKKHAGFIIKRKISKPTTKSCLNFPSSSMTLLLFLLVVLHLHFCTAAPPFFHPLDPLNPVELDQIRLAVQKSHLGKLPNLTFHFVDLEEPDKKDVLSWLSSGEENNPLHRLPRHGKVVVRAADSTHELLVDLATRSVKSDQVYSGLGYPPLTFVELVQASKLPLNFPNFKDSIQRRGLNLSHVSCIPFTVGWYGEKTTKRLLKVACFYREGTINVFSRPIEGIITLIDVDSMKIINYSDRFTAPLPQSEGTDYQSKKTEPKSSNCKAAKRRFTIEGHQVKWENWVFHVGFNARAGIIISTASIFDDEKKKFRRVLYRGHISETFVPYMDPTNEWYFRTFMDIGEFGFGRAADTLQPLVDCPETAEYLDGYMAGADGRPQKVSRAICIFERHSGDVLWRHTEINIPGKVIRRGEPEISLVVRMVATVGNYDYVLDWEFKRSGSIKMGVALTGLLEVKATPYRNTMDVTQQTYGTLIADNTIAVNHDHYLTYYLDLDVDGTANSFVKAKLITATTANVNATSPRKSYWKIIRETIETETEAKLQLGSGPAELLFVNPNKKTKIGNPVGYRLITGQPVNSLLADDDYPQIRAAYTKYPLWVTPYNKSERWPAGFYADRSRGDDGLAVWAKRNRRIDNRDIVLWYTVGFHHSPCQEEFPAMAALHGGFELRPANYFDRNPILK 1345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7081883 7094862 - ClCG06G006180.1 Cla06g00581 274773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00581 1345 PANTHER AMINE OXIDASE 699 1345 - -
Cla06g00581 1345 ProSitePatterns Copper amine oxidase copper-binding site signature. 617 630 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00581 1345 Pfam Copper amine oxidase, N3 domain 815 908 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00581 1345 Pfam Copper amine oxidase, N3 domain 118 215 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00581 1345 Pfam Copper amine oxidase, enzyme domain 936 1343 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00581 1345 Pfam Copper amine oxidase, enzyme domain 239 653 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00581 1345 SUPERFAMILY Amine oxidase N-terminal region 813 919 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00581 1345 PANTHER AMINE OXIDASE 9 660 - -
Cla06g00581 1345 SUPERFAMILY Amine oxidase N-terminal region 114 223 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00581 1345 SUPERFAMILY Amine oxidase N-terminal region 24 112 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00581 1345 Gene3D - 118 213 - -
Cla06g00581 1345 Gene3D - 817 909 - -
Cla06g00581 1345 Gene3D - 23 116 - -
Cla06g00581 1345 Gene3D - 717 815 - -
Cla06g00581 1345 PANTHER COPPER AMINE OXIDASE 9 660 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00581 1345 ProSitePatterns Copper amine oxidase topaquinone signature. 1084 1097 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00581 1345 SUPERFAMILY Amine oxidase catalytic domain 935 1344 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00581 1345 SUPERFAMILY Amine oxidase N-terminal region 716 812 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00581 1345 PANTHER COPPER AMINE OXIDASE 699 1345 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00581 1345 Gene3D Copper amine oxidase, catalytic domain 938 1345 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00581 1345 Gene3D Copper amine oxidase, catalytic domain 248 665 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00581 1345 SUPERFAMILY Amine oxidase catalytic domain 226 661 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00581 1345 Pfam Copper amine oxidase, N2 domain 718 808 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cla06g00581 1345 Pfam Copper amine oxidase, N2 domain 25 109 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00581 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - csv:101210998 1211.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00353 Cla-Chr1:3866094 Cla06g00581 Cla-Chr6:7081883 1.70E-166 dispersed
Cla01g00354 Cla-Chr1:3878283 Cla06g00581 Cla-Chr6:7081883 5.99E-179 dispersed
Cla06g00578 Cla-Chr6:7038827 Cla06g00581 Cla-Chr6:7081883 0 dispersed
Cla06g00581 Cla-Chr6:7081883 Cla06g01692 Cla-Chr6:30522821 3.31E-62 dispersed
Cla06g00580 Cla-Chr6:7072481 Cla06g00581 Cla-Chr6:7081883 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g486 . . Bda03g00890 . Bpe04g00834 . Bma04g00786 . Cmo08g01122 Cmo17g00225 . . . . . . . . . . . . . . Cla06g00581 Cam06g0619 Cec06g0621 Cco06g0627 Clacu06g0606 Cmu06g0599 Cre06g1367 . . . Cone4ag0238 . . . . . . . . . . . . Sed01g3969 . . Cma08g01145 Cma17g00239 Car08g01028 Car17g00217 Cpe12g00201 . Bhi12g01713 Tan06g2525 Cmetu01g1582 Lac12g2283 Hepe03g0194 . Lcy13g0279 . . . . . . . Lsi09g01323 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00581 Cla_Chr06 FPKM 23.143835 25.836626 26.338108 27.268944 25.257538 23.382391 27.282156 31.522137 31.708437 33.854809