Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00583 ATGGAGGACGGTGTGAGATCTGGGGGTCCGTCGGGGGTTTTGGTGAAGACTAGGAACTCGTCTGGTTGCTTAATTGTTAGAAAAAAAGAGGATGGATTAGGAGGCGCCGGTTCTTCGGGCTCACGCTTGCTTAATGCAAAGAAGGAGAAGAAGAGGCCTAGGTTGGTTTTGAGTGATTCTGGGTCCAGTGATGAGTTATTGTTGCCTCATCGTAGACGGGTTGGTCCTGAAACCATTCGGGTTTGTAATGGTTTGAATTCTTTTGGGAAGGATGTTGTGGATGAGAGTGGAAGTATCAGAAAGAAGGATAGGTTGCAGTATGTTAAGCGGAATGATGATGGTTTAATCAACAGGATGGATGTGGATGGTTTACGAAGAAATATGGACACCTTAGATGTCTTTGAGTTCAACGAATATGATGAAATTGATGGCGAGACTTTTCGGAGGAAGCATTTTAATGACAGTGGAGAAAGACGGTTTGTTGGTTCCATGAAACTGCCTCAAATGGGCGTTGAGAGGGAATTTGGAACCGCTTCTAGCAGGCATGCTTTGGTGGACAAGAGAAAGAATTTGTATGCTGAACAAACCAATAGCTTTGATCGGGACAGGCCTCCCAGAAAGATTAACTATGACTCAGATAATGACGGACCTCAACTCCCAACACCCTTGTTGAGAGATAAGTTTAGGGGTCATTCTGATGAAGCAATCAGGGTTCAGGGAAAAAATGGAGTTTTAAAGGTCATGGTAAACAAGAAGAAAAATGTGAGTGGTGCTTCCGATATATATGATCATCGCAAATTAGAAGAAAGTAGAAAGAGTCTAAGGACTGAAGATACTCTGAAGAGGAAAGTGTTAGTTTCTTCTTCACTTCACCCAGAAACTAAGCCCAATGTGAAAGAGGATATCTTTTCTAAGCCAGAGAAAGACCATACAGATTTTCAAACTTCAGCATCAACAAAAAATGTAAAGGGTTGCAGTTGGGATTCAGGGGACAGTAGTGTGTCATTGAAGCCCAGAAAAAAGGTTGTTGAAGCTCACAAATCCACCAAGAAGGCAAGTTGTGAAGTTGATAAAATTCCATGTGAAGAAACTCCCCCAAGTACAGCAAAGGAAGGAAAAGTAAAACGAGGCAGTGGAACAGAGAAACAAAAGCTACGTGAAAGGATCAGGGGAATGCTCCTTAGTGCTGGCTGGAAAATCGATTACAGACCCAGAAGGAATAGAGATTATTTAGATGCTGTCTATGTTAATCCCACTGGAACAGCTTATTGGTCAATTATTAAGGCTTATGATGCCCTCCAAAAGCAATTAAACGAAGAAGGAGCAGAGGCTAAACCTAGTGCTGATGGTTCATTTACACCAATATCAGATGATATTCTTAGTCAATTAACCAGGAAAACTAGAAAGAAAATTGAGAAAGAATGGAAAAATAAGCAGAGAGATGATAGTGACAGTGAAAATGCTAAAGAAGCAAGCGCACTAAGATCTGCTGGTACCAAAAATGACATGGACAGCATGGACAGTGACAGCAATGAGGAAAAGTTAAGTTCTTTCATAAAGCAGGGTGGAAAATCTTTTAAAAATAAATTGACCGAGAATGGTTTTCCCACTGTCAACTCCAAAGGTCAAAGTTCTAGTAAGTATTCGCGTGATACCATTGTAAAATCTTCTTCTGGATCCAATTCACGTATTTTACATGGAAGAAGAGGTAGAAAGCTTGGATTGTTAGTTCGTGGCTCTAGTAGGGGATTAGATTCAGAGAATGATGGATATGTTCCATATACTGGTAAAAGGACTCTGCTTTCCTGGCTTATCGATTCTGGAACGGTGCAGTTGAGTCAAAAGGTCCGGTACATGAACCGCAGACAGACCCGGGTGATGCTGGAGGGGTGGATTACCAGAGATGGCATCCATTGCGGTTGCTGTAGCAAAATCCTAACTGTCTCCAAGTTTGAGATACATGCTGGAAGCAAATTACGCCAACCTTTTCAAAACATCTTTTTGGAGTCTGGGGTTTCTCTTCTGCAGTGCCAGAGAGATGCATGGAATAGACAGGAGGAGTCGAAACGCCTCAGTTTCCACACGGTTGAAATTGATGGTGATGATCCGAATGATGACACATGTGGCATCTGCGGAGATGGTGGAGACTTAATCTGTTGTGATGGGTGTCCATCAACTTTTCATCAGAGTTGTTTAGATATTCAGATTCCTCCAGGTGATTGGCACTGCCCAAATTGTACTTGCAAGTATTGTGGAGTTGCCAGTGTTGATATTTCTCAGGGAGACAATACCATTGTTCCTGAGATATCTACTTGCATGTTATGCGAGAAAAAATTTCATGAGTCCTGCAATCTTGAGATGGATACTTCTGTTCATTCCAATGCTTCAGTCACTTCTTTTTGTGGCAAGAATTGCAGAGAGACTAATTATTGCATTTTACAGCTTTTTGAGAGTTTGCAGAAGCATCTTGGGGTGAAACATGAATTAGATGCAGGATTCTCGTGGTCTCTTATCCGTAGAACAAGTGAAGATTCGGATGTATCTGTTCGTGGACTTTCTCAAAGGATCGAATGCAACTCTAAACTGGCTGTTGCATTAACAGTTATGGATGAATGCTTTTTGCCTATTGTTGACAGGAGGAGTGGGATAAATCTAATTCATAATGTTCTTTATAACTGTGGATCAAACTTTTATAGGCTAAATTATAGTGGCTTCTACACTGCTATTTTGGAAAGGGGTGATGAAATCATCTCTGCAGCAACAATCAGAAAAGTAACAATCAGCAAACAAACCATTGATAAGAGGAACAATCGGCCAAGGAACCACCAAATGTTTGGCTCAGCATCATCCTTGCTCACGGTTTTTCCCCCAAAGGAAACACCTGCCAGCATCAAGTTTCATGGGACTAAGTTAGCTGAAATGCCATTCATTGGTACACGCCATATTTATAGACGTCAAGGAATGTGCCGTCGGCTTTTTTGCGCAATTGAATCTGCTCTCCGCGTGCTTAAGGTTGAGAAACTGATTATACCAGCAATCGCTGAGCTCATGCACACTTGGAGTGTGATTTTTGGCTTTAGTCCTCTGGAGCAATCACTCAAGCAAGAAATGAGACTGATGAATATGCTGGTGTTCCCTGGAACAGATATGTTACAGAAGCTGTTAATCCAAGAGACATTTGTCGAGGAGAATACTTCTACTGGCTCAGGTGCAAAGCAAACGGATTGTAGAAGTACAGAGTTAAGTAGTCCTAAGATGGATACAGAGACCTCATCTGGCCATGAACCTCAAAGTTGTGATGACACTGAACAGCATCACTCCAAAGAGAAAAGAAATGAAGCAGCTGTCACTAAACCAAATCCTGAATCCTTGTCTGTTTCTCTAAATGATACTTCTGCGGCAAATAGTCCTCTGGATGCATTTTGTGAAGTTAAAAAGTCATGTTCTCCAATGCAAACTGTAAATTCGGATTGGGATTCTGGTGATAAAGTTAAATGTTCGTCTCGATCTGATTCACCTGACTCTCTTCAACGCAACATTAAGCCAGGAACTCAGCATGATATAGAGGACCATGTGCAGGTCACTTCCCAATGTATGGAAGCTGATACATCTTCAGACGGATTTCTTGAACCTAAGGTTAAAGTTTCAGATGAAGGAATCATTTGTTCCAATTCTCATGCTGGGCATGAGTTGGCTGACTCCGGTTCTGAGAAGAAATCTTTTCCTCCTGCAATAGGCAATGGCATGGATGAGTTTGTAAATGACATTCGCGTAGTGGATTCTCCTGAAGATGATAAGTCATTCAATAAGATTAATGGTCATGAATTTTGTGAAGACGATGTCCATGCTAATGCTCTTAAACCTGCTCAGTCGGTTGAGAATCCACTTGTCTCTAATGCTAGTTTATGTGGCACTAATGGACACCCCTACGAAACTACATCTGATTGCAAAAACGCAAGACCTTATGGGAAAGAAACTGTTTCTGATGGAATTTGTGACAGTGAAAATTCTCCACAGTCATGTGGGGCAAAAACCAGAGGTGATTCACAGGAAGAGAAAGCTGAATCTGGTTCGGTTTGA 4080 41.64 MEDGVRSGGPSGVLVKTRNSSGCLIVRKKEDGLGGAGSSGSRLLNAKKEKKRPRLVLSDSGSSDELLLPHRRRVGPETIRVCNGLNSFGKDVVDESGSIRKKDRLQYVKRNDDGLINRMDVDGLRRNMDTLDVFEFNEYDEIDGETFRRKHFNDSGERRFVGSMKLPQMGVEREFGTASSRHALVDKRKNLYAEQTNSFDRDRPPRKINYDSDNDGPQLPTPLLRDKFRGHSDEAIRVQGKNGVLKVMVNKKKNVSGASDIYDHRKLEESRKSLRTEDTLKRKVLVSSSLHPETKPNVKEDIFSKPEKDHTDFQTSASTKNVKGCSWDSGDSSVSLKPRKKVVEAHKSTKKASCEVDKIPCEETPPSTAKEGKVKRGSGTEKQKLRERIRGMLLSAGWKIDYRPRRNRDYLDAVYVNPTGTAYWSIIKAYDALQKQLNEEGAEAKPSADGSFTPISDDILSQLTRKTRKKIEKEWKNKQRDDSDSENAKEASALRSAGTKNDMDSMDSDSNEEKLSSFIKQGGKSFKNKLTENGFPTVNSKGQSSSKYSRDTIVKSSSGSNSRILHGRRGRKLGLLVRGSSRGLDSENDGYVPYTGKRTLLSWLIDSGTVQLSQKVRYMNRRQTRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIFLESGVSLLQCQRDAWNRQEESKRLSFHTVEIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQIPPGDWHCPNCTCKYCGVASVDISQGDNTIVPEISTCMLCEKKFHESCNLEMDTSVHSNASVTSFCGKNCRETNYCILQLFESLQKHLGVKHELDAGFSWSLIRRTSEDSDVSVRGLSQRIECNSKLAVALTVMDECFLPIVDRRSGINLIHNVLYNCGSNFYRLNYSGFYTAILERGDEIISAATIRKVTISKQTIDKRNNRPRNHQMFGSASSLLTVFPPKETPASIKFHGTKLAEMPFIGTRHIYRRQGMCRRLFCAIESALRVLKVEKLIIPAIAELMHTWSVIFGFSPLEQSLKQEMRLMNMLVFPGTDMLQKLLIQETFVEENTSTGSGAKQTDCRSTELSSPKMDTETSSGHEPQSCDDTEQHHSKEKRNEAAVTKPNPESLSVSLNDTSAANSPLDAFCEVKKSCSPMQTVNSDWDSGDKVKCSSRSDSPDSLQRNIKPGTQHDIEDHVQVTSQCMEADTSSDGFLEPKVKVSDEGIICSNSHAGHELADSGSEKKSFPPAIGNGMDEFVNDIRVVDSPEDDKSFNKINGHEFCEDDVHANALKPAQSVENPLVSNASLCGTNGHPYETTSDCKNARPYGKETVSDGICDSENSPQSCGAKTRGDSQEEKAESGSV 1359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7117484 7127203 + ClCG06G006200.1 Cla06g00583 274775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00583 1359 MobiDBLite consensus disorder prediction 30 62 - -
Cla06g00583 1359 MobiDBLite consensus disorder prediction 472 489 - -
Cla06g00583 1359 CDD PHD2_CHD_II 708 746 - -
Cla06g00583 1359 MobiDBLite consensus disorder prediction 490 504 - -
Cla06g00583 1359 MobiDBLite consensus disorder prediction 1330 1345 - -
Cla06g00583 1359 MobiDBLite consensus disorder prediction 1152 1182 - -
Cla06g00583 1359 SMART PHD_3 707 747 IPR001965 -
Cla06g00583 1359 MobiDBLite consensus disorder prediction 307 330 - -
Cla06g00583 1359 MobiDBLite consensus disorder prediction 368 382 - -
Cla06g00583 1359 MobiDBLite consensus disorder prediction 472 565 - -
Cla06g00583 1359 MobiDBLite consensus disorder prediction 1064 1131 - -
Cla06g00583 1359 MobiDBLite consensus disorder prediction 315 330 - -
Cla06g00583 1359 PANTHER PHD FINGER FAMILY PROTEIN 1 1240 - -
Cla06g00583 1359 MobiDBLite consensus disorder prediction 515 564 - -
Cla06g00583 1359 MobiDBLite consensus disorder prediction 194 220 - -
Cla06g00583 1359 MobiDBLite consensus disorder prediction 194 210 - -
Cla06g00583 1359 MobiDBLite consensus disorder prediction 363 382 - -
Cla06g00583 1359 ProSitePatterns Zinc finger PHD-type signature. 708 746 IPR019786 -
Cla06g00583 1359 MobiDBLite consensus disorder prediction 1310 1359 - -
Cla06g00583 1359 MobiDBLite consensus disorder prediction 44 58 - -
Cla06g00583 1359 SUPERFAMILY FYVE/PHD zinc finger 696 752 IPR011011 -
Cla06g00583 1359 MobiDBLite consensus disorder prediction 1064 1093 - -
Cla06g00583 1359 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1240 - -
Cla06g00583 1359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 807 IPR013083 -
Cla06g00583 1359 MobiDBLite consensus disorder prediction 1094 1116 - -
Cla06g00583 1359 Pfam PHD-finger 708 749 IPR019787 -
Cla06g00583 1359 Pfam Tify domain binding domain 630 680 IPR032308 -
Cla06g00583 1359 ProSiteProfiles Zinc finger PHD-type profile. 705 749 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00583 - - - cmo:103489665 2244.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00583 Cla-Chr6:7117484 Cla11g01718 Cla-Chr11:30765310 1.29E-110 dispersed
Cla03g01245 Cla-Chr3:26716517 Cla06g00583 Cla-Chr6:7117484 1.08E-09 transposed
Cla06g00583 Cla-Chr6:7117484 Cla09g00660 Cla-Chr9:6273541 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61255 PF16135 TDBD 4.20E-22 No_clan Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00583 Cla_Chr06 FPKM 0.0 0.0 2.815361 3.214715 0.0 0.0 0.0 2.452711 2.086262 2.555921