Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00595 ATGGAAGCTAGAAAAATGGAATTGAGTATTGTTTTGGCGATGGTGGCCTTGTTGTTATGGGCAGGAGAAGCAATGGCACAGTCGTCGGATTGTAGCAATGTGTTGATTAGCCTCTCGCCTTGCCTCAATTACATCACTGGCAACTCCTCCATGCCGTCTCCGAGCTGCTGCTCGCAGCTGTCCACCGTCGTCCGCTCGCAACCGCAGTGCCTTTGCCAAGTCCTCAATAACCGCGGCGGCGCCTCTGCGATTGGGGGACTCAATGTCAACCAAACTCTAGCTCTTGCTCTTCCTGGTGTTTGTCGTATTCAGACTCCGCCCATTACCCGTTGTAATGCTGCTTCTCCGACAAACGACATTCCAGCAGAATCACCAAAATCTCCGAGCGAAGAGCCTACAGAGAGAGGATCAAGAAGTGTGCCAACAACCACAGAAGATGGAACATCCAATGGAACTTCAACAATATTGTTGTCCAAAGCTCTTGTCTTCATCTTCCTTCTTGCCGCAACTTTTGCTCCATTAATCCATTGA 531 49.72 MEARKMELSIVLAMVALLLWAGEAMAQSSDCSNVLISLSPCLNYITGNSSMPSPSCCSQLSTVVRSQPQCLCQVLNNRGGASAIGGLNVNQTLALALPGVCRIQTPPITRCNAASPTNDIPAESPKSPSEEPTERGSRSVPTTTEDGTSNGTSTILLSKALVFIFLLAATFAPLIH 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7254077 7256387 - ClCG06G006310.2 Cla06g00595 274787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00595 176 MobiDBLite consensus disorder prediction 112 150 - -
Cla06g00595 176 Pfam Probable lipid transfer 23 111 IPR016140 -
Cla06g00595 176 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 8 172 IPR043325 -
Cla06g00595 176 MobiDBLite consensus disorder prediction 134 150 - -
Cla06g00595 176 CDD AAI_LTSS 38 103 - -
Cla06g00595 176 Gene3D - 28 109 IPR036312 -
Cla06g00595 176 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 30 112 IPR036312 -
Cla06g00595 176 SMART aai_6 31 111 IPR016140 -
Cla06g00595 176 PRINTS Plant phospholipid transfer protein signature 88 105 IPR000528 GO:0006869|GO:0008289
Cla06g00595 176 PRINTS Plant phospholipid transfer protein signature 51 65 IPR000528 GO:0006869|GO:0008289
Cla06g00595 176 PRINTS Plant phospholipid transfer protein signature 30 46 IPR000528 GO:0006869|GO:0008289
Cla06g00595 176 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 8 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00595 - - - cmo:103489675 280.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00595 Cla-Chr6:7254077 Cla09g01498 Cla-Chr9:29043158 4.33E-16 dispersed
Cla05g00530 Cla-Chr5:4896171 Cla06g00595 Cla-Chr6:7254077 7.27E-50 wgd
Cla06g00595 Cla-Chr6:7254077 Cla07g00036 Cla-Chr7:376035 8.69E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g528 . . . . . Bpe14g01197 . . . . . Cma14g01723 . Car14g01554 . Cpe08g00270 Cpe03g01446 . . . . . . . Cla06g00595 Cam06g0634 Cec06g0637 Cco06g0640 Clacu06g0620 Cmu06g0613 Cre06g1381 Cone14ag0860 Cone15ag0858 . . Lsi05g01618 . . . . . . . . . . . . Cmo06g01400 Cmo14g01762 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001192 1 2 1 1 1 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 2 2 1 2 3 3 3 2 3 4 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00595 Cla_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.199436 0.0