Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00598 ATGGGCACAGTAGGTGATAATTGGGGAGACGATTGTTCTGTCATTAAAGACAAAGGAGAGATTTCCTATATTGACTACGAAGACGATAAATCTGTTTGCAGTTATAATCCTATTGAGGAAGGTCCAGTTATTGTTTCAGTGCCATTTGCTTTTGTGAACGGCAAACCTCAATCAGTTTTCGTTGGAGAAACAGCGGTTGATGCCATTACCATCAAGAACACCACCGATGAATCAGTGGACCTATGGGCTGTTAATATTTATGCATCTAATCCTGAAAACTCATTTACGCTCTCTCTAATGGAGCCCCCAGCTCCAAATGCTGACATAGAAAGTGTACAAGCTTTCTTGGAGTCTTTTTCGTTGGAGGATAGAATGATCCATCCGGATGAGTCTCTTACTATATGGCTGTCTTGCAAACCAAAGGAAATTGGTTTGCACACAACAGTTGTGCATTTTGATCTCGGCAATGAAAGAATAGAACGAGTGTCTTTTCTTTTAGCAGATGATAAGATTTCACAGTCGTTGGCTTCTAGGAAGCCATATTCAAGAGATAGGAGAAGGAGGCATGAGGCAGTAGATTCGTATATTCCTGGCTCACGTCCTACTAGAACGCAAGGTCGGGGATTCAAAAATTTCCTTCTCCAATATGAAATCCCTAGTAGAATTAGAGATGAACTTAGCAGAAAGGAGATCCCTAGTGCTGTTCGAGAAGGACTTAAAAGAGATACCTACATTCCCTATTTCATGACATTGTTGAACATGGAAGAAATACAATTGGAGGAAGACATGAGAGCTTATGATATGGAGCGTGTTACTATGAGAAGAAAGGGACATAACTTTTTGTCCCTCGAGGTTCCGGGGCTCGCTGAGAGAAGGCCTTCACTTGTCCATGGAGACTATATCCTTGCCAAGATGCCTTTTGGACATACAAATGACTCGGTTCCTGCTTATCAGTTTTATCACGTGAACAATTCCAGTATTGTGCAGGGGTATATTCATCACGTTGAAGCTGATGAAGTTTTCCTAAAATTTGCTCCAGAATTTCACATTAACCACAGAGATGACAATCTGTATAATGTCCAGTTTACCTACAACAGAATTAACATGAGAAGGTTCTATCAGGCTGTTGATGCTGCAGAAAGTTTAGCAAAGGAGTTTCTGTTCCCATACGAGTTTTCAGAAAGAAGATATATCAAGACTACTCCACTGGTGCCTATAACTCAAAACATCAATGAGGAACAGATGCGTTGTGTTCAGATGATCCTTGGTTGCAGAGGTGCGCCACCTTATTTAGTTCATGGACCTCCTGGTACTGGTAAGACTCAAACTTTGGTGGAAGCTATCCTCCAACTCTACACAACACAAAAGAATGCTCGGATACTTGTTTGCGCTCCTTCAAATAGTGCTGCAGACCACATACTGGAGAAGCTTCTCAGTCAGGAGAGTGTTGAAATTCGTGATAATGATGTTTTCAGGCTAAATGCAAGCACACGACAATATGAGGAAATCAAGCCTGACCACCTTCGCTACTGCTTCTTTGATGAACACATTTTCAGGTGTCCTCCACGCAATGCCCTAGTCCACTATAGGATTGTCGTTTCAACTTATACGAGTACTTCCCTTCTTTATGCTGAGGATATCAAGCGTGGTCACTTCTCTCACATTTTCTTGGATGAGGCTGGCCAAGCTTCAGAACCAGAATCCATAATTCCAGTATCCAACCTCTGTCTAAGGAGAACAGTTGTCGTTCTTGCTGGTGATCCCATGCAATTAGGTCCAGTGATTTACTCCAAGGAAGCAGAAATTTATGGATTGGGTAAATCATATTTGGAAAGGCTTTTTGAATGTGAATATTACAGCACTGGGGATGAAAACTATGTAATAAAGTTGTTAAGAAACTATAGATGTCATCCAGATATCTTGCATCTTCCTTCTACATTGTTCTATGGTGGGGAACTAATTGCATGTAAAGATGAGAGAAGTCTCCTCACGGATACAGCAGATATTCTTCAAGTACTTCCTAATAAAGAGTTTCCTGTTCTTTTCTTTGGTATCCAAGGTTGTGATGAGCGAGAAGGCAACAATCCATCATGGTTTAACCGAATTGAGGTAAGCAAGGTGGTTGAGATTATAAGAAAACTGACTGATGGTGGAAATCTGAGTGAGGAAAATATCGGGGTCATAACGCCGTATCGACAACAAGTGCTCAAAATAAGGAAAGCCCTTGATAGCCTGGATATGCTTGATATAAAGGTTGGTAGTGTAGAACAATTTCAAGGACAAGAGAGGCAAGTGATTATTGTTTCTACTGTTCGATCAACAATCAAACACAATGAGTTTGACAGAACCTACTGTTTGGGGTTTTTGAGTAATCCAAGAAGGTTTAATGTGGCTGTTACCCGGGCTATATCTCTTCTGGTCATAATTGGCAACCCCCATATAATCAATCAGGATATGTATTGGAACAAGCTGTTATGGCAGTGTTTTGACAAAGATTCATATCAAGGTTGTCCCCTTCCTGAAAGGCAGGACCCCACAGACGAGGAACAACCCTGCAATAACGAAGAGGGACAAAGTTCAGGATTTGGAGCAGGCCAGAATCCAGAGCAGCCGGAGCCAGCACTGGCACCGGAAACGGAATTTTCTGAACCAGTTGTTGATGAAGCTGAATGGTCTGATGGGTGGAAGTAA 2691 41.69 MGTVGDNWGDDCSVIKDKGEISYIDYEDDKSVCSYNPIEEGPVIVSVPFAFVNGKPQSVFVGETAVDAITIKNTTDESVDLWAVNIYASNPENSFTLSLMEPPAPNADIESVQAFLESFSLEDRMIHPDESLTIWLSCKPKEIGLHTTVVHFDLGNERIERVSFLLADDKISQSLASRKPYSRDRRRRHEAVDSYIPGSRPTRTQGRGFKNFLLQYEIPSRIRDELSRKEIPSAVREGLKRDTYIPYFMTLLNMEEIQLEEDMRAYDMERVTMRRKGHNFLSLEVPGLAERRPSLVHGDYILAKMPFGHTNDSVPAYQFYHVNNSSIVQGYIHHVEADEVFLKFAPEFHINHRDDNLYNVQFTYNRINMRRFYQAVDAAESLAKEFLFPYEFSERRYIKTTPLVPITQNINEEQMRCVQMILGCRGAPPYLVHGPPGTGKTQTLVEAILQLYTTQKNARILVCAPSNSAADHILEKLLSQESVEIRDNDVFRLNASTRQYEEIKPDHLRYCFFDEHIFRCPPRNALVHYRIVVSTYTSTSLLYAEDIKRGHFSHIFLDEAGQASEPESIIPVSNLCLRRTVVVLAGDPMQLGPVIYSKEAEIYGLGKSYLERLFECEYYSTGDENYVIKLLRNYRCHPDILHLPSTLFYGGELIACKDERSLLTDTADILQVLPNKEFPVLFFGIQGCDEREGNNPSWFNRIEVSKVVEIIRKLTDGGNLSEENIGVITPYRQQVLKIRKALDSLDMLDIKVGSVEQFQGQERQVIIVSTVRSTIKHNEFDRTYCLGFLSNPRRFNVAVTRAISLLVIIGNPHIINQDMYWNKLLWQCFDKDSYQGCPLPERQDPTDEEQPCNNEEGQSSGFGAGQNPEQPEPALAPETEFSEPVVDEAEWSDGWK 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7261922 7266805 - ClCG06G006340.2 Cla06g00598 274790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00598 896 Gene3D - 634 838 IPR027417 -
Cla06g00598 896 PANTHER DNA2/NAM7 HELICASE FAMILY 4 855 IPR045055 -
Cla06g00598 896 CDD DEXXQc_Helz-like 411 635 - -
Cla06g00598 896 CDD SF1_C_Upf1 636 828 IPR041679 -
Cla06g00598 896 MobiDBLite consensus disorder prediction 838 896 - -
Cla06g00598 896 Pfam AAA domain 606 812 IPR041679 -
Cla06g00598 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 406 825 IPR027417 -
Cla06g00598 896 MobiDBLite consensus disorder prediction 177 200 - -
Cla06g00598 896 MobiDBLite consensus disorder prediction 852 866 - -
Cla06g00598 896 Pfam AAA domain 410 510 IPR041677 GO:0004386
Cla06g00598 896 Pfam AAA domain 525 598 IPR041677 GO:0004386
Cla06g00598 896 PANTHER RNA HELICASE SDE3-RELATED 4 855 - -
Cla06g00598 896 Gene3D - 333 621 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00598 K18422 MOV10; helicase MOV-10 [EC:3.6.4.13] - csv:101209925 1652.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00598 Cla-Chr6:7261922 Cla10g01633 Cla-Chr10:31976200 6.98E-35 dispersed
Cla06g00598 Cla-Chr6:7261922 Cla10g00190 Cla-Chr10:2151110 1.90E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g530 . Blo12g00334 Bda03g00877 . Bpe04g00822 . Bma04g00775 . Cmo08g01110 . . . . . . . . . . . . . . . Cla06g00598 Cam06g0637 Cec06g0640 Cco06g0643 Clacu06g0623 Cmu06g0616 Cre06g1384 Cone14ag0862 . . . . . . . . . . . . . . . . . . Cma08g01136 . Car08g01018 . . Cpe17g00154 . . . . . . . . . . . . . . Lsi09g01306 . . Cme01g01579
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009068 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00598 Cla_Chr06 FPKM 92.622826 86.984604 79.557304 86.399498 129.22316 124.531578 112.215584 93.948639 100.875923 88.911713