Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00599 ATGGATTCCACTCCTCACAATAAACCCACCAAACTCCCTCCTCTCTCCAAATTTGAGGATTCACCAGTTTTCAATTTCATCAACAGTCTGTCTCCCATTAAGCCTGTTAAATCCATTCACATTACTCAAACATTCAACTCCATCTCTTTCCCTTCCCTTCCAGTTTTCACTTCCCCACCACATCACTTTAGTCCTCTCAACTCCCCAAAAAGGCCGAGTTTTTCCAACCCTTCGAGATCCCCGCCTGCAGTTTCTAAAAATGAAGGAGCAGTTATAATAATGGATCAGTTACTGGAGATTTTCGTGCCCCAAATTCCTCCCCCGGCCGACGGTTCAACTCCGGCAATTCAGCCACCGGAAACGGTCAATGCCGACGCCGGCCAGGTTCGGATATTTCGTTGTCCGATTAGCTCTGAAGCTATGGAGGAGGCGATTCATGGAGGGGAAGATGAGGGATTGCTTCAAAACGACGGCGTTTTGGATAGAATAGAGGAGAACAAGAGCGGGAACATGCGGAGGCGATGCCTAGATTTCGAAATGGCGGGAAAGCCCAACACGGCGGCGGCTGCGGTGGAGGCGACCGCCGATGCTTCAATTCCCGGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTTCGACGCACTCTGCCTGGTATCGGTTTGCACTTGAATGCTCTTGCAGCGACTTTGAAGCACTCCGATTCAGAGAATCTGTGTTCCGAAAGGCAGCCGAGTCTTCCCAGCTCTTCTGCCCCCATTTTTGCCCCAAATTCCACTCGAGATCAGCCCTTGTTGGCTTCATCCACTCCTGAAAGTGAAAACCCTCAAGAACCTGCGAATCTGACTGGAGAAGAACTCAATCAGATCAACCCTAAAAAGAATTGGAAACTGATGGAAAATGCTGGAATTGGGGCGTGTAAACGTTGTAACTGTAAGAAATCTAAGTGCCTGAAGCTATATTGTGAATGCTTTGCTGCTGGCGTGTACTGCATTGAGCCATGTTCATGTCAAGGCTGCTTCAACAAACCGATACATGAAGCTGTGGTTCTTGAGACTCGCAGACAGATTGAATCTCGCAATCCACTTGCATTTGCTCCTAAAGTGATCGTGAACTGTGATTCTGTTTCTGAACTTGGGGAAGATTCAAACAAAACTCCTGCTTCAGCACGGCATAAACGAGGATGCAACTGTAAGAAATCAGGATGCTTGAAAAAATACTGCGAATGCTATCAGGGTGGTGTTGGATGCTCCATCAACTGCAGATGTGAAGGCTGCAAAAATGCATTTGGGAGGAAAGATGAATCATCTCTAATAGGAATTGAAACTGAACAAGAGGAAGAAGCAAGAGAACATTGCCAAAAAAATGCAGAAGTACAGAGCGATGAAGATAATCAGAACCCAAGCAACGCTGCTCCCTCGACACCACTAGGACCATGCAGATCATTGATTCCATTTCCATTCCAATTGAAGAGGAGGCTTCCATCTTTCCTCAATGATGAATCCTCCTCTAGATTGAGCGTTCGATTCAAACTCGAGAAGCATAGCATCACTCAAACAGAGCCGAAGTTTGAGAAAACACCCTGTGAGGATGTGATGCCAGAAACACTTTGTAATAGTTGCCCTTCTAGCACAGGTGTTAAGAGTGTTTCTCCCAACATCGGTAATGGTTTCGCCATTGTTGCCGCTGATTCTTCGGCGGTTCACAGCATCTTGGTCCATAAATCCGACGAGGACAAGATTATGGTCCTCGACTCTCACAAGCTCGTCGCTGCTAGTGGCGAGCCTGGTGACAGGGTTCAGTTCACCGAGTACATCCAGAAGAATGTGGCGTTGTATCAGTTCCGGAATGGGATCCCATTGACAACTGCTGCTGCTGCTAATTTTACTCGGGGCGAACTCGCCACTGCATTGAGAAAGAATCCATACTCTGTTAATATCCTCTTGGCTGGCTATGATAAGGAGACTGGCCCATCACTTTACTACATCGATTACATTGCAACGCTTCACAAGGTTGAGAAAGGTGCTTTTGGTTACGGATCCTACTTTTCACTCTCTATGATGGATAGGCATTACCACAGCGGCATGTCAGTCGAGGAAGCAATCGACTTGGTCGATAAGTGCATCGTCGAGATTCGTTCAAGGCTGGTAGTGGCTCCACCAAACTTTGTGATCAAGATTGTTGACAAGGATGGGGCAAGAGAGGTTGCATGGCGTCAATCCATTAAAGATACTGGAGCTCTTCCAGTTTGA 2253 46.87 MDSTPHNKPTKLPPLSKFEDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPPHHFSPLNSPKRPSFSNPSRSPPAVSKNEGAVIIMDQLLEIFVPQIPPPADGSTPAIQPPETVNADAGQVRIFRCPISSEAMEEAIHGGEDEGLLQNDGVLDRIEENKSGNMRRRCLDFEMAGKPNTAAAAVEATADASIPGSSSSSSSSSSSFRRTLPGIGLHLNALAATLKHSDSENLCSERQPSLPSSSAPIFAPNSTRDQPLLASSTPESENPQEPANLTGEELNQINPKKNWKLMENAGIGACKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQGCFNKPIHEAVVLETRRQIESRNPLAFAPKVIVNCDSVSELGEDSNKTPASARHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNAFGRKDESSLIGIETEQEEEAREHCQKNAEVQSDEDNQNPSNAAPSTPLGPCRSLIPFPFQLKRRLPSFLNDESSSRLSVRFKLEKHSITQTEPKFEKTPCEDVMPETLCNSCPSSTGVKSVSPNIGNGFAIVAADSSAVHSILVHKSDEDKIMVLDSHKLVAASGEPGDRVQFTEYIQKNVALYQFRNGIPLTTAAAANFTRGELATALRKNPYSVNILLAGYDKETGPSLYYIDYIATLHKVEKGAFGYGSYFSLSMMDRHYHSGMSVEEAIDLVDKCIVEIRSRLVVAPPNFVIKIVDKDGAREVAWRQSIKDTGALPV 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7267377 7277267 - ClCG06G006350.2 Cla06g00599 274791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00599 750 MobiDBLite consensus disorder prediction 61 85 - -
Cla06g00599 750 SMART CXC_2 391 432 IPR033467 -
Cla06g00599 750 SMART CXC_2 305 346 IPR033467 -
Cla06g00599 750 MobiDBLite consensus disorder prediction 238 289 - -
Cla06g00599 750 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 81 - -
Cla06g00599 750 MobiDBLite consensus disorder prediction 454 478 - -
Cla06g00599 750 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 157 553 IPR044522 GO:0003700
Cla06g00599 750 MobiDBLite consensus disorder prediction 61 83 - -
Cla06g00599 750 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 157 553 - -
Cla06g00599 750 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 81 IPR044522 GO:0003700
Cla06g00599 750 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 308 343 IPR005172 -
Cla06g00599 750 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 394 429 IPR005172 -
Cla06g00599 750 ProSiteProfiles CRC domain profile. 306 431 IPR005172 -
Cla06g00599 750 MobiDBLite consensus disorder prediction 460 476 - -
Cla06g00599 750 CDD proteasome_beta_type_2 554 738 IPR035206 GO:0010498
Cla06g00599 750 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 555 736 IPR029055 -
Cla06g00599 750 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 554 738 IPR029055 -
Cla06g00599 750 ProSiteProfiles Proteasome beta-type subunit profile. 543 728 IPR023333 -
Cla06g00599 750 Pfam Proteasome subunit 555 728 IPR001353 GO:0005839|GO:0051603
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00599 Cla-Chr6:7267377 Cla08g01314 Cla-Chr8:26049978 4.01E-45 dispersed
Cla04g00568 Cla-Chr4:19316290 Cla06g00599 Cla-Chr6:7267377 2.43E-26 transposed
Cla05g00518 Cla-Chr5:4802217 Cla06g00599 Cla-Chr6:7267377 1.39E-15 transposed
Cla08g01018 Cla-Chr8:22898153 Cla06g00599 Cla-Chr6:7267377 2.08E-08 transposed
Cla05g00527 Cla-Chr5:4890854 Cla06g00599 Cla-Chr6:7267377 3.38E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61257 PF00227 Proteasome 2.60E-36 CL0052 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00599 - - bhj:120092727 1009.98