Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00599 ATGGATTCCACTCCTCACAATAAACCCACCAAACTCCCTCCTCTCTCCAAATTTGAGGATTCACCAGTTTTCAATTTCATCAACAGTCTGTCTCCCATTAAGCCTGTTAAATCCATTCACATTACTCAAACATTCAACTCCATCTCTTTCCCTTCCCTTCCAGTTTTCACTTCCCCACCACATCACTTTAGTCCTCTCAACTCCCCAAAAAGGCCGAGTTTTTCCAACCCTTCGAGATCCCCGCCTGCAGTTTCTAAAAATGAAGGAGCAGTTATAATAATGGATCAGTTACTGGAGATTTTCGTGCCCCAAATTCCTCCCCCGGCCGACGGTTCAACTCCGGCAATTCAGCCACCGGAAACGGTCAATGCCGACGCCGGCCAGGTTCGGATATTTCGTTGTCCGATTAGCTCTGAAGCTATGGAGGAGGCGATTCATGGAGGGGAAGATGAGGGATTGCTTCAAAACGACGGCGTTTTGGATAGAATAGAGGAGAACAAGAGCGGGAACATGCGGAGGCGATGCCTAGATTTCGAAATGGCGGGAAAGCCCAACACGGCGGCGGCTGCGGTGGAGGCGACCGCCGATGCTTCAATTCCCGGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTTCGACGCACTCTGCCTGGTATCGGTTTGCACTTGAATGCTCTTGCAGCGACTTTGAAGCACTCCGATTCAGAGAATCTGTGTTCCGAAAGGCAGCCGAGTCTTCCCAGCTCTTCTGCCCCCATTTTTGCCCCAAATTCCACTCGAGATCAGCCCTTGTTGGCTTCATCCACTCCTGAAAGTGAAAACCCTCAAGAACCTGCGAATCTGACTGGAGAAGAACTCAATCAGATCAACCCTAAAAAGAATTGGAAACTGATGGAAAATGCTGGAATTGGGGCGTGTAAACGTTGTAACTGTAAGAAATCTAAGTGCCTGAAGCTATATTGTGAATGCTTTGCTGCTGGCGTGTACTGCATTGAGCCATGTTCATGTCAAGGCTGCTTCAACAAACCGATACATGAAGCTGTGGTTCTTGAGACTCGCAGACAGATTGAATCTCGCAATCCACTTGCATTTGCTCCTAAAGTGATCGTGAACTGTGATTCTGTTTCTGAACTTGGGGAAGATTCAAACAAAACTCCTGCTTCAGCACGGCATAAACGAGGATGCAACTGTAAGAAATCAGGATGCTTGAAAAAATACTGCGAATGCTATCAGGGTGGTGTTGGATGCTCCATCAACTGCAGATGTGAAGGCTGCAAAAATGCATTTGGGAGGAAAGATGAATCATCTCTAATAGGAATTGAAACTGAACAAGAGGAAGAAGCAAGAGAACATTGCCAAAAAAATGCAGAAGTACAGAGCGATGAAGATAATCAGAACCCAAGCAACGCTGCTCCCTCGACACCACTAGGACCATGCAGATCATTGATTCCATTTCCATTCCAATTGAAGAGGAGGCTTCCATCTTTCCTCAATGATGAATCCTCCTCTAGATTGAGCGTTCGATTCAAACTCGAGAAGCATAGCATCACTCAAACAGAGCCGAAGTTTGAGAAAACACCCTGTGAGGATGTGATGCCAGAAACACTTTGTAATAGTTGCCCTTCTAGCACAGGTGTTAAGAGTGTTTCTCCCAACATCGGTAATGGTTTCGCCATTGTTGCCGCTGATTCTTCGGCGGTTCACAGCATCTTGGTCCATAAATCCGACGAGGACAAGATTATGGTCCTCGACTCTCACAAGCTCGTCGCTGCTAGTGGCGAGCCTGGTGACAGGGTTCAGTTCACCGAGTACATCCAGAAGAATGTGGCGTTGTATCAGTTCCGGAATGGGATCCCATTGACAACTGCTGCTGCTGCTAATTTTACTCGGGGCGAACTCGCCACTGCATTGAGAAAGAATCCATACTCTGTTAATATCCTCTTGGCTGGCTATGATAAGGAGACTGGCCCATCACTTTACTACATCGATTACATTGCAACGCTTCACAAGGTTGAGAAAGGTGCTTTTGGTTACGGATCCTACTTTTCACTCTCTATGATGGATAGGCATTACCACAGCGGCATGTCAGTCGAGGAAGCAATCGACTTGGTCGATAAGTGCATCGTCGAGATTCGTTCAAGGCTGGTAGTGGCTCCACCAAACTTTGTGATCAAGATTGTTGACAAGGATGGGGCAAGAGAGGTTGCATGGCGTCAATCCATTAAAGATACTGGAGCTCTTCCAGTTTGA 2253 46.87 MDSTPHNKPTKLPPLSKFEDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPPHHFSPLNSPKRPSFSNPSRSPPAVSKNEGAVIIMDQLLEIFVPQIPPPADGSTPAIQPPETVNADAGQVRIFRCPISSEAMEEAIHGGEDEGLLQNDGVLDRIEENKSGNMRRRCLDFEMAGKPNTAAAAVEATADASIPGSSSSSSSSSSSFRRTLPGIGLHLNALAATLKHSDSENLCSERQPSLPSSSAPIFAPNSTRDQPLLASSTPESENPQEPANLTGEELNQINPKKNWKLMENAGIGACKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQGCFNKPIHEAVVLETRRQIESRNPLAFAPKVIVNCDSVSELGEDSNKTPASARHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNAFGRKDESSLIGIETEQEEEAREHCQKNAEVQSDEDNQNPSNAAPSTPLGPCRSLIPFPFQLKRRLPSFLNDESSSRLSVRFKLEKHSITQTEPKFEKTPCEDVMPETLCNSCPSSTGVKSVSPNIGNGFAIVAADSSAVHSILVHKSDEDKIMVLDSHKLVAASGEPGDRVQFTEYIQKNVALYQFRNGIPLTTAAAANFTRGELATALRKNPYSVNILLAGYDKETGPSLYYIDYIATLHKVEKGAFGYGSYFSLSMMDRHYHSGMSVEEAIDLVDKCIVEIRSRLVVAPPNFVIKIVDKDGAREVAWRQSIKDTGALPV 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7267377 7277267 - ClCG06G006350.2 Cla06g00599 274791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00599 750 MobiDBLite consensus disorder prediction 61 85 - -
Cla06g00599 750 SMART CXC_2 391 432 IPR033467 -
Cla06g00599 750 SMART CXC_2 305 346 IPR033467 -
Cla06g00599 750 MobiDBLite consensus disorder prediction 238 289 - -
Cla06g00599 750 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 81 - -
Cla06g00599 750 MobiDBLite consensus disorder prediction 454 478 - -
Cla06g00599 750 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 157 553 IPR044522 GO:0003700
Cla06g00599 750 MobiDBLite consensus disorder prediction 61 83 - -
Cla06g00599 750 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 157 553 - -
Cla06g00599 750 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 81 IPR044522 GO:0003700
Cla06g00599 750 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 308 343 IPR005172 -
Cla06g00599 750 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 394 429 IPR005172 -
Cla06g00599 750 ProSiteProfiles CRC domain profile. 306 431 IPR005172 -
Cla06g00599 750 MobiDBLite consensus disorder prediction 460 476 - -
Cla06g00599 750 CDD proteasome_beta_type_2 554 738 IPR035206 GO:0010498
Cla06g00599 750 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 555 736 IPR029055 -
Cla06g00599 750 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 554 738 IPR029055 -
Cla06g00599 750 ProSiteProfiles Proteasome beta-type subunit profile. 543 728 IPR023333 -
Cla06g00599 750 Pfam Proteasome subunit 555 728 IPR001353 GO:0005839|GO:0051603
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00599 - - - bhj:120092727 1009.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00599 Cla-Chr6:7267377 Cla08g01314 Cla-Chr8:26049978 4.01E-45 dispersed
Cla04g00568 Cla-Chr4:19316290 Cla06g00599 Cla-Chr6:7267377 2.43E-26 transposed
Cla05g00518 Cla-Chr5:4802217 Cla06g00599 Cla-Chr6:7267377 1.39E-15 transposed
Cla08g01018 Cla-Chr8:22898153 Cla06g00599 Cla-Chr6:7267377 2.08E-08 transposed
Cla05g00527 Cla-Chr5:4890854 Cla06g00599 Cla-Chr6:7267377 3.38E-132 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla06g00599 . 171 494 CPP Transcription Factor Family AT3G22760 50.2 2.9e-76 283.1
Cla08g01314 . 325 450 CPP Transcription Factor Family AT3G22780 57.1 2.6e-38 157.5
Cla08g01314 . 297 450 CPP Transcription Factor Family AT4G14770 51.3 5.9e-40 162.9
Cla11g00214 CCT,ECH 667 1096 CPP Transcription Factor Family AT2G20110 61.9 5.8e-142 501.5
Cla08g01314 . 325 459 CPP Transcription Factor Family AT3G04850 52.2 6.0e-37 152.9
Cla11g00214 CCT,ECH 604 1103 CPP Transcription Factor Family AT4G29000 56.8 1.5e-151 533.5
Cla06g00866 CCT,ECH 407 730 CPP Transcription Factor Family AT4G29000 51.5 2.3e-75 280.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010127 0 1 0 0 1 1 3 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61257 PF00227 Proteasome 2.60E-36 CL0052 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00599 Cla_Chr06 FPKM 0.65641 1.221513 0.236403 0.223693 0.338176 0.644223 0.221137 1.45201 1.607638 1.62534