Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00612 ATGAGTGCCGGCACGGCGACGTTCCGGTCTATACTCGACAAACCCCTCAACCAGTTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGATTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCCTCATGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCATTGCTTGAACCTTGTGATGATTCCGGCGCCGGTGCTCTCAGGAAGGTCGTCGTTTCGCCTCGGGTGAATTCAAATCAAGGCGATTCACCCAAAGAACCGAGTGATGATGCTCAGGTTACAGTGTCAGTTGATGAATCTGCTTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACCGGTTGAACCAGACAACTATGTCACTAGTCCCAGGCATGAAAGAAAATTTGGGTTGAAATTAGTCTTGCTGGAAAGAAGTATCTTGAACTATCATGTGAAAGATCAATATGATACGAATGGAGTGGATGGTCAAATGACAATTTTCTATTGTGGCAAGGTGAATGTGTATGATGGAGTTCCACCAGATAAGGCATGGGCAATCATGCATCTTGCAGCTAGTCCAATTCATTTCCCTCAGAATCATCCCTTGGGTGGAACTGCTGTATGTCAGTCTCCACCATGTCTTTTGCAGACTTCCAGTGACAGAGATGACTTTTTTCCTCCTAGTGCTACCATCTATAGAAATGTGCACACAGAGAAGATGGTTGAACACTCTCAGCAGCAGCAGCAAGCAAAGGGAACCAGTACACGAGATTCTGATGTTGAGGGTCAGGCGAGTCGGCAAGTTTCATTACAGAGATATCGTGAAAAGCGAAAAGACAGGTACCTTTGTCTAAGTTTGTTTTTCAGTTATAAGGGAAGGTTAAAGAACAAGAAAAATACAGGATTGTCTTCTTCTAGCCTGGAGGGATATATGAACCATCCAATGAGGACGCACATATCCAATAAGAATTTAGGTCAGATTGTGACAAGCTCTTTATCTCCAACTGGAGTAGCAAAAGCCTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGTTTTCCTGTCGACCTTAATGTCAAAGGTAGAGCTATAGAGCTTTTATATTAG 1119 44.33 MSAGTATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGAGALRKVVVSPRVNSNQGDSPKEPSDDAQVTVSVDESAYSNVETAKSTPEDPPVEPDNYVTSPRHERKFGLKLVLLERSILNYHVKDQYDTNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHFPQNHPLGGTAVCQSPPCLLQTSSDRDDFFPPSATIYRNVHTEKMVEHSQQQQQAKGTSTRDSDVEGQASRQVSLQRYREKRKDRYLCLSLFFSYKGRLKNKKNTGLSSSSLEGYMNHPMRTHISNKNLGQIVTSSLSPTGVAKAFVGTADNQPKLACFPVDLNVKGRAIELLY 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7420379 7424826 + ClCG06G006490.2 Cla06g00612 274804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00612 372 SMART tify_2 160 195 IPR010399 -
Cla06g00612 372 Pfam tify domain 166 194 IPR010399 -
Cla06g00612 372 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 3 338 IPR040390 -
Cla06g00612 372 MobiDBLite consensus disorder prediction 81 100 - -
Cla06g00612 372 MobiDBLite consensus disorder prediction 107 131 - -
Cla06g00612 372 MobiDBLite consensus disorder prediction 242 274 - -
Cla06g00612 372 Pfam Jas motif 266 283 IPR018467 -
Cla06g00612 372 MobiDBLite consensus disorder prediction 244 272 - -
Cla06g00612 372 ProSiteProfiles Tify domain profile. 160 195 IPR010399 -
Cla06g00612 372 PANTHER PROTEIN TIFY 4B-LIKE ISOFORM X1 3 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00612 - - - bhj:120092625 614.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00102 Cla-Chr9:1039353 Cla06g00612 Cla-Chr6:7420379 4.27E-06 dispersed
Cla06g00612 Cla-Chr6:7420379 Cla03g01430 Cla-Chr3:29895915 3.92E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g554 Blo01g00111 . . Bda08g00254 . . . Bma05g01092 Cmo08g01098 Cmo17g00201 . . . . . . . . . . . . . . Cla06g00612 Cam06g0650 Cec06g0653 Cco06g0656 Clacu06g0637 Cmu06g0631 Cre06g1398 Cone14ag0872 . . . . Csa02g01125 Chy05g00381 . . Blo07g00232 Bda11g00596 . Bpe05g00883 Bpe13g00588 . Bma06g01570 Sed09g0734 . . Cma08g01125 . Car08g01006 Car17g00183 Cpe12g00176 Cpe17g00164 Bhi12g02238 Tan06g2483 Cmetu05g1474 . . . . . . . . . . . Lsi09g01294 . . Cme05g00489
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003252 2 5 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61258 PF06200 tify 3.40E-15 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00612 Cla_Chr06 FPKM 5.027454 5.254218 6.063731 4.646704 10.337446 10.344666 10.926899 4.543439 6.580155 6.274025