Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00619 ATGTCCGAATCGGCGAGTCCGACAACCCAACGGGTTCAGTCTTCTTCTTCTTCTTCTTCGATTGATACCAGAGGAAAACATAGGATTCAGGCTGAAGTGAAGCGGCTCGAGCAAGAAGCAAGGTTTCTGGAGGAAGAACTGGAACAGCTAGATAAACTGGACAAGGCATCAACAAAATGCAAAGAAATGCTGAGCAATGTGGAGACAAGACCAGACCCTCTTCTCCCACTAACCCATGGCCCCTTAAATCCGCTATGGGATCGATGGTTCGAAGGTCCGCAAGATTCTAAAGGTTTAAGCCGTTTTGGGCCGTCGATCTTCCGGCGGCAATTCCCAAGCTCTTCTCTTCTTTGGCATCTCCGTCTCTCTGCATTAATCTCCATCTCCGTTTCCGAATTCTCCCATTCCCTTTCTCCAAATTCCCGATTTCCCTTCACAATGACACAATCTCTGCAACTTTTCACCTCTTCCGCCCGCTCTCCCGGCATTTCTCTACCCAAACACTCCCTCTCAAAACCCTCCCCTTCCTCCGCCGCTCTCCGCTTTCCCTTCTCCTTCTCCAAATCCTCAATTCGAGCCTCTTCTTCTCCGGATCTCAATCCTCTCTCATCTTCTTCCACTTCCCAAGTCTTGGTTTCTGAAAATGGCTCCAGTGCCGGAGGTGGGGTTGTGTCATCTTCTGGTACTAGGGAATTTGTGCCTCTTGCCTCTGATTCCAGTTCGATTGAGGTTGATGCTGTCACGGAGGCTGAGTTGAAGGAGAATGGCTTCAGGAGTACCAGGAGGACTAAGCTTGTGTGCACTATTGGCCCTGCTACTTGCGGCTTTGATCAGCTCGAGGCGCTCGCTGTTGGCGGTATGAATGTCGCTAGGATCAATATGTGCCATGGGACTCGAGACTGGCATCGGACGGTCATTGAACGCGTGCGAAGGCTCAATGAAGAGAAGGGTTATGCTGTCGCTATCATGATGGATACTGAAGGGAGTGAAATTCACATGGGTGATCTCGGTGGAGCTTCTTCGGCTAAAGCGGAAGATGGTGAAATCTGGACATTCAGCGTCAGAGCTTTCGATTCAACACTCCCAGAACGCACCATTAATGTGAACTATGAAGGGTTTGCAGAAGATGTGAAAGTGGGTGATGACCTCCTTGTTGATGGTGGAATGGTGAGGTTTGAGGTAATCGAAAAAATTGGTCCTGATGTTAAGTGCCGGTGTACTGACCCGGGATTGTTGTTGCCACGGGCAAATTTGACTTTTTGGAGGGATGGACATCTAGTACGAGAACGTAATGCCATGCTCCCTACAATTTCTTCTAAGGATTGGTTGGATATTGATTTTGGGATTGCTGAAGGTGTTGATTTTATTGCCATATCATTTGTCAAGTCTGCTGAAGTAATTAAACATCTCAAAAGCTATATTGCTGCACGTTGTCGTGGCAGTGACATTTCCATCATTGCAAAAATAGAGAGTTTGGACTCGTTGAAGAACTTGGAAGAAATTATTGTAGCATCAGATGGAGCAATGGTAGCTAGAGGAGATTTAGGAGCTCAAATACCACTGGAACAAGTGCCATCAGTCCAGCAAAAGGTCGTCCAACTGTGCAGGCAATTAAATAAACCAGTTATTGTTGCTTCTCAACTGCTTGAGTCAATGATCGAATACCCTACACCCACCAGAGCTGAAGTGGCTGATGTTTCCGAGGCGGTTAGGCAGCGATCAGATGCTCTAATGCTCTCTGGGGAGTCTGCCATGGGCCAATACCCCGACAAGGCATTGGCTGTTTTGAGAAGTGTCAGTCTAAGAATTGAGAAGTGGTGGAGGGATGAGAAACGCCATGAACCTATGGAACTCCCAGAAGTTGGATCTTCATTCTCAGATAGTATCTTAGAAGAGATCTGCAATTCGGCTGCCAAAATGGCCAATAACTTGGAGGTGGATGCAATTTTCGTCTATACAACATCAGGCCACATGGCATCTCTCCTGTCCCGTTGCCGACCCGATTGTCCAATCTTTGCTTTTACTTCCACAACATCTGTGAGGAGACGTCTTAACTTGCAATGGGGATTGATACCCTTCCGGCTGAGCTTCTCCGACGATATGGAAAATAACCTCAACAAAACATTTTTGCTGCTTAAAGCCAGAAACTTGATCAAATCAGGTGACCTTGTAATTGCTGTCTCAGATATGTTGCAATCTATCCAAGTTATGAATGTTCCATAA 2223 46.92 MSESASPTTQRVQSSSSSSSIDTRGKHRIQAEVKRLEQEARFLEEELEQLDKLDKASTKCKEMLSNVETRPDPLLPLTHGPLNPLWDRWFEGPQDSKGLSRFGPSIFRRQFPSSSLLWHLRLSALISISVSEFSHSLSPNSRFPFTMTQSLQLFTSSARSPGISLPKHSLSKPSPSSAALRFPFSFSKSSIRASSSPDLNPLSSSSTSQVLVSENGSSAGGGVVSSSGTREFVPLASDSSSIEVDAVTEAELKENGFRSTRRTKLVCTIGPATCGFDQLEALAVGGMNVARINMCHGTRDWHRTVIERVRRLNEEKGYAVAIMMDTEGSEIHMGDLGGASSAKAEDGEIWTFSVRAFDSTLPERTINVNYEGFAEDVKVGDDLLVDGGMVRFEVIEKIGPDVKCRCTDPGLLLPRANLTFWRDGHLVRERNAMLPTISSKDWLDIDFGIAEGVDFIAISFVKSAEVIKHLKSYIAARCRGSDISIIAKIESLDSLKNLEEIIVASDGAMVARGDLGAQIPLEQVPSVQQKVVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRSDALMLSGESAMGQYPDKALAVLRSVSLRIEKWWRDEKRHEPMELPEVGSSFSDSILEEICNSAAKMANNLEVDAIFVYTTSGHMASLLSRCRPDCPIFAFTSTTSVRRRLNLQWGLIPFRLSFSDDMENNLNKTFLLLKARNLIKSGDLVIAVSDMLQSIQVMNVP 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7526586 7533977 + ClCG06G006560.2 Cla06g00619 274811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00619 740 Gene3D - 261 603 IPR040442 -
Cla06g00619 740 Gene3D - 604 730 IPR036918 -
Cla06g00619 740 Pfam Pyruvate kinase, barrel domain 261 606 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cla06g00619 740 TIGRFAM pyruv_kin: pyruvate kinase 261 729 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cla06g00619 740 MobiDBLite consensus disorder prediction 1 30 - -
Cla06g00619 740 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 247 607 IPR015813 GO:0003824
Cla06g00619 740 ProSitePatterns Pyruvate kinase active site signature. 483 495 IPR018209 GO:0004743|GO:0006096
Cla06g00619 740 PANTHER PYRUVATE KINASE 231 740 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cla06g00619 740 SUPERFAMILY PK C-terminal domain-like 592 738 IPR036918 -
Cla06g00619 740 SMART G_gamma_2 30 102 - -
Cla06g00619 740 Pfam GGL domain 30 92 IPR015898 GO:0007186
Cla06g00619 740 MobiDBLite consensus disorder prediction 1 24 - -
Cla06g00619 740 PANTHER PLASTIDIAL PYRUVATE KINASE 1, CHLOROPLASTIC 231 740 - -
Cla06g00619 740 Coils Coil 26 53 - -
Cla06g00619 740 PRINTS Pyruvate kinase family signature 318 334 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cla06g00619 740 PRINTS Pyruvate kinase family signature 512 536 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cla06g00619 740 PRINTS Pyruvate kinase family signature 562 580 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cla06g00619 740 PRINTS Pyruvate kinase family signature 537 561 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cla06g00619 740 PRINTS Pyruvate kinase family signature 453 467 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cla06g00619 740 PRINTS Pyruvate kinase family signature 485 511 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cla06g00619 740 PRINTS Pyruvate kinase family signature 581 597 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cla06g00619 740 Pfam Pyruvate kinase, alpha/beta domain 631 730 IPR015795 -
Cla06g00619 740 Gene3D - 329 435 IPR015806 GO:0004743|GO:0006096
Cla06g00619 740 MobiDBLite consensus disorder prediction 191 226 - -
Cla06g00619 740 SUPERFAMILY PK beta-barrel domain-like 330 421 IPR011037 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00619 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101218017 1048.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02367 Cla-Chr2:38726985 Cla06g00619 Cla-Chr6:7526586 5.44E-73 transposed
Cla04g00954 Cla-Chr4:24608587 Cla06g00619 Cla-Chr6:7526586 1.27E-42 transposed
Cla05g00935 Cla-Chr5:9250829 Cla06g00619 Cla-Chr6:7526586 2.27E-123 transposed
Cla05g01783 Cla-Chr5:29727167 Cla06g00619 Cla-Chr6:7526586 3.58E-17 transposed
Cla09g01161 Cla-Chr9:13752172 Cla06g00619 Cla-Chr6:7526586 6.54E-118 transposed
Cla10g00959 Cla-Chr10:22590990 Cla06g00619 Cla-Chr6:7526586 0 transposed
Cla11g01254 Cla-Chr11:26059459 Cla06g00619 Cla-Chr6:7526586 5.43E-68 transposed
Cla05g00499 Cla-Chr5:4564293 Cla06g00619 Cla-Chr6:7526586 8.68E-36 wgd
Cla06g00619 Cla-Chr6:7526586 Cla07g00050 Cla-Chr7:540890 1.40E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g584 Blo01g00106 . . Bda08g00261 . . . Bma05g01085 . . . . . . . . . . . . . . . . Cla06g00619 Cam06g0657 Cec06g0661 Cco06g0667 Clacu06g0644 Cmu06g0638 Cre06g1405 . . . . . Csa02g01116 Chy05g00372 . . . . . Bpe05g00875 . . . Sed09g0729 . . Cma08g01117 Cma17g00198 Car08g01000 Car17g00175 Cpe12g00169 Cpe17g00168 Bhi12g02248 Tan06g2474 Cmetu05g0533 . Hepe03g0236 . Lcy13g0319 . . . . . . . Lsi09g01285 . . Cme05g00500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006080 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00619 Cla_Chr06 FPKM 18.369034 17.919844 4.538114 4.091462 3.853894 4.229884 3.520784 6.392881 5.377957 6.537914