Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00622 ATGGAGCCCGGTGGTCCGCCCACCCCTCCGCCGCTCCCTCCGCCGCCTACTGGTGCCACTCTCCTTGGCAAGTACCAATTGGGCCGTTTCCTCGGCCGTGGAAGCTTCGCTAAGGTGTATCAGGCCCGTTCTCTCGCCGATAACTCCATTGTCGCCGTCAAAATCATCGACAAGAACAAAACCATCGACGCCGCTATGGAGCCCTGCATTGTCCGTGAGATCGCCGTGATGCGACGCCTTCAGCACCATCCGAACATCCTCAAAATCCATGAAGTTATGGCGACGAAGACGAAGATCTACCTCGTTGTCGATTACGCCTCCGGAGGTGAACTATTCGCGAAACTCCTCCGTCGTGGTCGGCTGACGGAATCCACCGCTCGCCGCTACTTTCAACAATTAGTCTCTGCTCTCCATTTCTGTCACCAAAACGGCGTCGCTCATCGCGACATTAAACCCCAAAATCTCCTCCTCGATGAAGACGGTAACCTGAAGGTCTCCGACTTCGGTCTCTCCGCCTTACCAGAACAGATCAAAGACGGAATGCTTCACACCGCCTGTGGAACTCCGGCGTATACCGCGCCAGAGGTTGTTTCCCGGCGAGGCTACGACGGCGCAAAAGCCGATGCGTGGTCCTGTGGCGTTATCCTCTTCGTTTTACTCTCCGGCCATCTTCCATTCAGCGATAATAACCTCGTCGCTATGTACAAGAAGGTTTATCGCCGGGAATATCAATTTCCCGATTCAATTTCAAAGCCAGCGAGACATTTGATCTTCCAATTACTCGATCCAAATCCAAATACAAGGATGAGCATCGAGGCGTTAATGCAACATTCATGGTACAAGAAGTCACTGCGATCGAAGCCCCAAATTAGCAACAGGAGCTTATTTGAATCATTAGGTAATTACAAATCTGATTTGGGTGTTTCTGGATTAAATGCATTTGATATAATTTCAATGTCTTCTGGTTTGGATCTGTCTGGATTGTTTGAGACGACGGATTGTAATAAGAAGAGATTCACAACAGGAGTTAGTATGGAGAAAGTGGAAGAAAGGGTAACAGAGATTGGAGGAGAATTGGGTTATAGAGTGGAGAAAGGGAAAAGTGGGGCAATTGGGTTAGGGAAAGGGAGAATGATTTTGGTGGTGGAAGCTTTGGAAATAACTTCAAATCTGTTAATGGTGGAAGTGAAGGTAGCTGAATCCAAGATGGAGTTTGAGAGGATGCATTGGGGTGATTTGAAAGCAAAATTGCAGGATATTGTTGATTCTTGGCATACAAATGAAGCAATGTGA 1293 48.41 MEPGGPPTPPPLPPPPTGATLLGKYQLGRFLGRGSFAKVYQARSLADNSIVAVKIIDKNKTIDAAMEPCIVREIAVMRRLQHHPNILKIHEVMATKTKIYLVVDYASGGELFAKLLRRGRLTESTARRYFQQLVSALHFCHQNGVAHRDIKPQNLLLDEDGNLKVSDFGLSALPEQIKDGMLHTACGTPAYTAPEVVSRRGYDGAKADAWSCGVILFVLLSGHLPFSDNNLVAMYKKVYRREYQFPDSISKPARHLIFQLLDPNPNTRMSIEALMQHSWYKKSLRSKPQISNRSLFESLGNYKSDLGVSGLNAFDIISMSSGLDLSGLFETTDCNKKRFTTGVSMEKVEERVTEIGGELGYRVEKGKSGAIGLGKGRMILVVEALEITSNLLMVEVKVAESKMEFERMHWGDLKAKLQDIVDSWHTNEAM 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7606407 7607699 + ClCG06G006595.1 Cla06g00622 274814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00622 430 CDD CIPK_C 312 414 - -
Cla06g00622 430 Gene3D Kinase associated domain 1, KA1 308 422 - -
Cla06g00622 430 ProSiteProfiles Protein kinase domain profile. 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00622 430 Gene3D Transferase(Phosphotransferase) domain 1 17 307 - -
Cla06g00622 430 PANTHER SERINE/THREONINE KINASE 16 427 - -
Cla06g00622 430 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Cla06g00622 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Cla06g00622 430 Pfam Protein kinase domain 25 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00622 430 SMART serkin_6 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00622 430 SUPERFAMILY Protein kinase-like (PK-like) 22 289 IPR011009 -
Cla06g00622 430 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 427 - -
Cla06g00622 430 Pfam NAF domain 311 365 IPR004041 GO:0007165
Cla06g00622 430 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00494 Cla06g00622 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00622 Cla-Chr6:7606407 Cla02g01867 Cla-Chr2:33855379 1.10E-132 dispersed
Cla02g02057 Cla-Chr2:35606040 Cla06g00622 Cla-Chr6:7606407 7.11E-41 transposed
Cla06g00217 Cla-Chr6:2575877 Cla06g00622 Cla-Chr6:7606407 7.27E-49 transposed
Cla05g00494 Cla-Chr5:4499662 Cla06g00622 Cla-Chr6:7606407 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80626 PF00069 Pkinase 3.00E-73 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00622 K12761 - csv:101215156 817.764