Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla06g00628 | ATGGCTCGGGACGGGCATGTAGTGCCAGTGGATCCACAGACGGTGCTGACTGTGAAGAAGAAGAAACAGTCTTCTCGGAATTGGATTCTACTGGATTGTACGGGCCAAGGGACCGTCCTCGATGTCGACAAGCATGCTATTATGCATCGAGTTCAAATTCATGCTCGAGACCTTCGGATTCTTGATCCTTTGCTTTCTTATCCCTCCACGATTTTAGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTGCTTAGAGATCCGACAGATGAACATGTCATCCCTGTGGTGGAGGAGCTGCAGAGGCGACTGCCTCCTTCTAATGCCTTCCAGTTTCAAGTTCAAGGAGATGGTAAAGAGTATCAGGGCCAACATGATGGTGAAGCTGAAGAAGATGACTCGCCATTTGAATTTCGTGCCCTTGAAGTTGCTTTGGAAGCCATATGTAGTTTTCTTGCTGCACGGACAACTGAACTGGAGACTGCTGCTTATCCTGCCCTGGATGAGCTTACTGCCAAGATTAGTAGCCGCAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACCAGGTTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTTGAACAATTACTGGACGATGATGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAGTTCATCCTCTCCTGTAAGTGGTTCTGGTCCTGCCAATTGGTTTCCTGCCTCTCCTACAATTGGTTCAAAGATCTCAAGAGCAAGCAGAGCAAGTGTTGCGACTGTACGAGGGGATGAGGATGATATTGAGGAGCTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGAACATTGAACAAATTAACCACACTGCGAGAATATATTGATGACACAGAAGATTATATTAATATCCAGCTTGACAATCACCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGAACTGTTTGTTTGTCTATCTATTCTTTGGTGAGTGCAATATTCGGCATGAACATTCCATACACTTGGAATGACGATCACGGATACATGTTTAAATGGGTTGTCATTGTTTCTGGAGTAGCTTGTGCGGTGTTGTTTGTCACAATTATTTACTATGCTCGCTACAAAGGTTTGGTGGGATCTTGA | 1179 | 44.44 | MARDGHVVPVDPQTVLTVKKKKQSSRNWILLDCTGQGTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPTDEHVIPVVEELQRRLPPSNAFQFQVQGDGKEYQGQHDGEAEEDDSPFEFRALEVALEAICSFLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSGSGPANWFPASPTIGSKISRASRASVATVRGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVSAIFGMNIPYTWNDDHGYMFKWVVIVSGVACAVLFVTIIYYARYKGLVGS | 392 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 7704903 | 7710095 | + | ClCG06G006640.1 | Cla06g00628 | 274820 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla06g00628 | 392 | PANTHER | MAGNESIUM TRANSPORTER MRS2-I | 1 | 392 | - | - | |
| Cla06g00628 | 392 | Gene3D | - | 14 | 99 | - | - | |
| Cla06g00628 | 392 | Pfam | CorA-like Mg2+ transporter protein | 269 | 379 | IPR002523 | GO:0016020|GO:0030001|GO:0046873|GO:0055085 | |
| Cla06g00628 | 392 | Coils | Coil | 193 | 220 | - | - | |
| Cla06g00628 | 392 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 328 | 380 | IPR045863 | - | |
| Cla06g00628 | 392 | CDD | Mrs2_Mfm1p-like | 28 | 389 | IPR039204 | - | |
| Cla06g00628 | 392 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 1 | 392 | IPR039204 | - | |
| Cla06g00628 | 392 | Gene3D | Magnesium transport protein CorA, transmembrane region | 105 | 322 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g01385 | Cla-Chr1:28189346 | Cla06g00628 | Cla-Chr6:7704903 | 2.53E-17 | transposed | |
| Cla02g00024 | Cla-Chr2:292387 | Cla06g00628 | Cla-Chr6:7704903 | 1.93E-80 | transposed | |
| Cla05g01020 | Cla-Chr5:10383588 | Cla06g00628 | Cla-Chr6:7704903 | 8.89E-101 | transposed | |
| Cla08g01046 | Cla-Chr8:23142915 | Cla06g00628 | Cla-Chr6:7704903 | 9.13E-77 | transposed | |
| Cla10g01225 | Cla-Chr10:26930061 | Cla06g00628 | Cla-Chr6:7704903 | 5.30E-45 | transposed | |
| Cla06g00628 | Cla-Chr6:7704903 | Cla07g00057 | Cla-Chr7:625087 | 2.59E-117 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla06g00628 | K16075 | - | csv:101203841 | 703.745 |