Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00628 ATGGCTCGGGACGGGCATGTAGTGCCAGTGGATCCACAGACGGTGCTGACTGTGAAGAAGAAGAAACAGTCTTCTCGGAATTGGATTCTACTGGATTGTACGGGCCAAGGGACCGTCCTCGATGTCGACAAGCATGCTATTATGCATCGAGTTCAAATTCATGCTCGAGACCTTCGGATTCTTGATCCTTTGCTTTCTTATCCCTCCACGATTTTAGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTGCTTAGAGATCCGACAGATGAACATGTCATCCCTGTGGTGGAGGAGCTGCAGAGGCGACTGCCTCCTTCTAATGCCTTCCAGTTTCAAGTTCAAGGAGATGGTAAAGAGTATCAGGGCCAACATGATGGTGAAGCTGAAGAAGATGACTCGCCATTTGAATTTCGTGCCCTTGAAGTTGCTTTGGAAGCCATATGTAGTTTTCTTGCTGCACGGACAACTGAACTGGAGACTGCTGCTTATCCTGCCCTGGATGAGCTTACTGCCAAGATTAGTAGCCGCAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACCAGGTTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTTGAACAATTACTGGACGATGATGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAGTTCATCCTCTCCTGTAAGTGGTTCTGGTCCTGCCAATTGGTTTCCTGCCTCTCCTACAATTGGTTCAAAGATCTCAAGAGCAAGCAGAGCAAGTGTTGCGACTGTACGAGGGGATGAGGATGATATTGAGGAGCTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGAACATTGAACAAATTAACCACACTGCGAGAATATATTGATGACACAGAAGATTATATTAATATCCAGCTTGACAATCACCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGAACTGTTTGTTTGTCTATCTATTCTTTGGTGAGTGCAATATTCGGCATGAACATTCCATACACTTGGAATGACGATCACGGATACATGTTTAAATGGGTTGTCATTGTTTCTGGAGTAGCTTGTGCGGTGTTGTTTGTCACAATTATTTACTATGCTCGCTACAAAGGTTTGGTGGGATCTTGA 1179 44.44 MARDGHVVPVDPQTVLTVKKKKQSSRNWILLDCTGQGTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPTDEHVIPVVEELQRRLPPSNAFQFQVQGDGKEYQGQHDGEAEEDDSPFEFRALEVALEAICSFLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSGSGPANWFPASPTIGSKISRASRASVATVRGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVSAIFGMNIPYTWNDDHGYMFKWVVIVSGVACAVLFVTIIYYARYKGLVGS 392
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 7704903 7710095 + ClCG06G006640.1 Cla06g00628 274820
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00628 392 PANTHER MAGNESIUM TRANSPORTER MRS2-I 1 392 - -
Cla06g00628 392 Gene3D - 14 99 - -
Cla06g00628 392 Pfam CorA-like Mg2+ transporter protein 269 379 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cla06g00628 392 Coils Coil 193 220 - -
Cla06g00628 392 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 328 380 IPR045863 -
Cla06g00628 392 CDD Mrs2_Mfm1p-like 28 389 IPR039204 -
Cla06g00628 392 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 392 IPR039204 -
Cla06g00628 392 Gene3D Magnesium transport protein CorA, transmembrane region 105 322 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01385 Cla-Chr1:28189346 Cla06g00628 Cla-Chr6:7704903 2.53E-17 transposed
Cla02g00024 Cla-Chr2:292387 Cla06g00628 Cla-Chr6:7704903 1.93E-80 transposed
Cla05g01020 Cla-Chr5:10383588 Cla06g00628 Cla-Chr6:7704903 8.89E-101 transposed
Cla08g01046 Cla-Chr8:23142915 Cla06g00628 Cla-Chr6:7704903 9.13E-77 transposed
Cla10g01225 Cla-Chr10:26930061 Cla06g00628 Cla-Chr6:7704903 5.30E-45 transposed
Cla06g00628 Cla-Chr6:7704903 Cla07g00057 Cla-Chr7:625087 2.59E-117 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00628 K16075 - csv:101203841 703.745