Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00637 ATGGATCATACTTTTACTGCGGAATTCTGGCATAACGATTTCTTTTGGCTCGACGCTCCCATTTCCGTCCCCGCCGCCGGTCCTGCGAGACAGATAAGTGCTTTCGTACCATATGATCCGTCTCAAGTGGCTACCGGATTGGGACAAGAAAACAATCCGACAACTACAACCGTCACCACGAGCTATAATTCTAGGAATGTCAACAAGAGGATGGTTGAGTATTGGAGGAAGCATTGGCATGAAAAGAAAGAAACAAGTCCCCTAGGGGAATTAGAGAGAGAAAAATGTCACCGTCACATGTTGAACGAGAGGATGAGAAGAGAGAAACAGAAACAGAGTTATTTGGCACTCCACTCCATGCTCCCCAAAAATACTAAGCGTCCAAATTTAGTAGTGTTTGTCATTAACGATAAGAATTCGATCGTTCAAAGTGCGGCGAGAGCAATACAAGAAATGAAAGCCTTAGAGGAGATTTTAAAGAGGAGAAACTTAGAGTTGGAGATGGCAATAGCAAGGAAGAAGAAAGAAAAGGAAAAAGAGACAACACCAATAATAAGTGTAGCATTGTCCAATCCTTCTTGTGGGATCAACTCAATGCTGGCTGTTCTCAATGTTCTCAAAACTGTTGGAGTAAATTCCAAAGCCATTCATGCCACTTTCGTCAACTCTCAGTTTTCAGCCCAATTAGCCATTGATACCCATATGGGAGCTGCCGAAGTAGAAAGAGCATTGCAGGTGACGCTAAACGAAGCTGAGAGGAAATTTCAAAGGCAATGCATGGAAGGGTCCAAACAAATAAAAGAGAGCCATTTTAATTTTAATAATAATAAAGGGGCCTACGAGGTGGGTCCAGAATTTCAATTTTAA 867 42.21 MDHTFTAEFWHNDFFWLDAPISVPAAGPARQISAFVPYDPSQVATGLGQENNPTTTTVTTSYNSRNVNKRMVEYWRKHWHEKKETSPLGELEREKCHRHMLNERMRREKQKQSYLALHSMLPKNTKRPNLVVFVINDKNSIVQSAARAIQEMKALEEILKRRNLELEMAIARKKKEKEKETTPIISVALSNPSCGINSMLAVLNVLKTVGVNSKAIHATFVNSQFSAQLAIDTHMGAAEVERALQVTLNEAERKFQRQCMEGSKQIKESHFNFNNNKGAYEVGPEFQF 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7864577 7865859 + ClCG06G006720.2 Cla06g00637 274829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00637 288 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 260 IPR044658 -
Cla06g00637 288 PANTHER TRANSCRIPTION FACTOR BHLH92 1 260 - -
Cla06g00637 288 CDD bHLH_AtbHLH_like 99 160 IPR045239 -
Cla06g00637 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 94 152 IPR011598 GO:0046983
Cla06g00637 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 169 IPR036638 GO:0046983
Cla06g00637 288 Gene3D - 89 170 IPR036638 GO:0046983
Cla06g00637 288 Coils Coil 145 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00637 - - - bhj:120068148 451.825
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g612 . . . . . . . . Cmo08g01078 Cmo17g00176 . . . . . . . . . . . . . . Cla06g00637 Cam06g0681 Cec06g0684 Cco06g0690 Clacu06g0667 Cmu06g0659 Cre06g1427 . . . Cone4ag0295 . Csa02g01090 Chy05g00351 . . . . . . . . Bma06g01583 . . . Cma08g01106 Cma17g00179 Car08g00979 Car17g00161 Cpe12g00155 . . . . . . . . . . . . . . . Lsi09g01263 . . Cme05g00532
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008643 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00637 Cla_Chr06 FPKM 22.531916 23.583733 23.922356 23.111 30.429184 26.683958 30.752602 22.177931 22.116697 23.547592