Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00642 ATGACGTCTTTCTCCCTCCATACACTCACACTCCACCGCTACATCATGGCTTTCAATCGACTTCACATCCTCCTCCACTTCACGGCGGTTCTGCTTCTTCTCTACTACCGGACCACCGCCCTCCACCGACGCAACCACCATCTCCTCTGGTCTCTCCTCACCCTCGCGGAACTCTTATTCGCCTTCGTTTGGCTCCTAACCCAGTCCTTCCGATGGCGCCCGGTCTCCCGCTCCGTGTCGCCGGAGAATCTTCCCGGCGAGGCGGAGCTTCCCGGCGTGGACGTGTTTATCTGCACGGCGGATCCGGCAAAAGAGCCGACGGTAGAGGTAATGAACACGGTGTTGTCGTGTCTAGCTCTGGATTATCCGGCGGAGAAGCTGGCGGTGTATCTTTCGGACGACGGTGGGTCTCCGGTGACGGATTATGGTGTGAAAAAAGCTGGATGGTTGGCAAAGGCTTGGGTTCCGTTTTGTAGAGAATACGGAATTAATTCAAGATGTCCAGAAATTTATTTCTCTTCGCTGGCAGACGAAGACCGGATTTTTCGAGATGACAAATTCGTAGAAGAGGAAAACAAAATTAAGAAGCAATACGAAGCGATGAAGAGGGATTTGGAAAGATTTGAAATGGAGAGAGATCATAAGAGTGGTGTCATCAAGGACCGATCTGCTCGTGTGGAGATCATTCTCGATGGAGAAAACGACGGAGAAGGATTCCGGCTGCCACTGCTCGTCTATGTCTCTCGAGAGCGAAGACCATCGGTTCCTCACCGGTACAAAGCCGGCAACATCAACAGTCTCGTTCGCGTCTCCGGATTGATCAGCAATAACCCTTATTTTTTGGTCTTAGACTGCGACATGCACTGCAATGACCCAACATCAGTTAAGCAAGCTATGTGCTTCTATCTTGATTCCACCTTTTCCAGCTCTCTGGGATTTGTTCAATTCCCCCAAATTTTCTACAATCTTAGTAAGAATGATATCTATGACAACCAAGCTAGACCTGCTTTCAAGACTAAGTGGATTGGAATGGATGGGCTAAGAGGGCCAGTGATGTCCGGAACTGGATATTTCTTGAGGAGGAAAGCGTTGTATGGGAGTCCTAATCAGGAAGAGGGGTTTGATGTGGAGCCACATAAAGTTTTTGGTCAATCTCAGAAGTTTATTGACTCATTGAAGATGGAAAAAGAATACCCAATGGATGAGATGTTGAATGAAGCTGTAACTTTGGCCTCATGTTCTTATGAGGAAAACACTGAATGGGGAAAAAAGATTGGGTTCTCGTATGACTGTTTGCTGGAGAGCACCTTCACTGGGTATCTGCTGCAATGCAAAGGATGGACTTCTGCTTATCTATACCCAAAGCGACCATGCTTCCTCGGTTGCAGCCCCGTTGACATGAAAGACGCCATGGTTCAGATGCTAAAATGGAGCTCCGAGTTATTCCAAGTTGGTTTCTCCAAGTATAGTCCTCTCATATACGGCATCTCGAGGATGTCCATTCTCCAAAGCATGTCCTACGCCTATTTTGCATTCTCTTCTCTGCTTTCAGTTGCTTTCGTCTTGTATGGGGTGGTTCCTCAGTGGGGCTTCTTGAAAGGCATCCCCTTGTATCCAAAGCTTTCAGATCCATGGTTTGCTGTGTTTGTTGCCATATTAATTTCTTCCATTGTGCAACACCTGATCGAGGTGTTCTCAAGCGGTGGAAACTTGAAGACATGGTGGAACGAGCTGAGAATCTGGATGGTGAAGTCAGTTTCTGCTTGCTTATTCGGGGTGGTAGATGCCATGATGAAGATAACAGGAATGAAGAAGACAGAGTTGAACCTTACAAACAAGGCAATAGACAAAGAGAAGCTCGAAAAATACGAAAAGGGAATGTTTGATTTGCAAGGAGCTGCAGTGCTAATGGCTCCTCTGTTTGTCCTAGGTCTATGGAATATGATTTGCTTTGTCGGTGGGATGAAGAAGGTGGTGAAGAACAGGAATTTTGAGGAGATGTTTGGGCAGATGTTTCTGCTATCCTTTGCTCTGGTTCTGCATTATCCTGTTCTTGTAGGGGTAATAAAAAGGAAAGGAAAATCTCACCACTGA 2094 46.94 MTSFSLHTLTLHRYIMAFNRLHILLHFTAVLLLLYYRTTALHRRNHHLLWSLLTLAELLFAFVWLLTQSFRWRPVSRSVSPENLPGEAELPGVDVFICTADPAKEPTVEVMNTVLSCLALDYPAEKLAVYLSDDGGSPVTDYGVKKAGWLAKAWVPFCREYGINSRCPEIYFSSLADEDRIFRDDKFVEEENKIKKQYEAMKRDLERFEMERDHKSGVIKDRSARVEIILDGENDGEGFRLPLLVYVSRERRPSVPHRYKAGNINSLVRVSGLISNNPYFLVLDCDMHCNDPTSVKQAMCFYLDSTFSSSLGFVQFPQIFYNLSKNDIYDNQARPAFKTKWIGMDGLRGPVMSGTGYFLRRKALYGSPNQEEGFDVEPHKVFGQSQKFIDSLKMEKEYPMDEMLNEAVTLASCSYEENTEWGKKIGFSYDCLLESTFTGYLLQCKGWTSAYLYPKRPCFLGCSPVDMKDAMVQMLKWSSELFQVGFSKYSPLIYGISRMSILQSMSYAYFAFSSLLSVAFVLYGVVPQWGFLKGIPLYPKLSDPWFAVFVAILISSIVQHLIEVFSSGGNLKTWWNELRIWMVKSVSACLFGVVDAMMKITGMKKTELNLTNKAIDKEKLEKYEKGMFDLQGAAVLMAPLFVLGLWNMICFVGGMKKVVKNRNFEEMFGQMFLLSFALVLHYPVLVGVIKRKGKSHH 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7919865 7923343 + ClCG06G006770.2 Cla06g00642 274834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00642 697 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 219 376 IPR029044 -
Cla06g00642 697 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 81 169 IPR029044 -
Cla06g00642 697 SUPERFAMILY Nucleotide-diphospho-sugar transferases 93 515 IPR029044 -
Cla06g00642 697 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN 5 695 - -
Cla06g00642 697 Coils Coil 191 211 - -
Cla06g00642 697 Pfam Cellulose synthase 93 367 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cla06g00642 697 Pfam Cellulose synthase 379 694 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cla06g00642 697 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 5 695 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00642 - - - bhj:120068467 1286.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00642 Cla-Chr6:7919865 Cla07g01081 Cla-Chr7:27438593 2.25E-152 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g637 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00642 Cam06g0687 Cec06g0689 Cco06g0696 Clacu06g0673 Cmu06g0664 Cre06g1432 . . . . Lsi05g01692 . . . . . . . . . . . . . . . . . . . . Bhi12g01651 . . Lac12g2203 . . Lcy13g0346 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007282 0 2 0 0 0 1 0 1 1 1 1 1 2 1 1 0 1 2 0 1 1 2 1 2 2 3 3 2 0 4 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00642 Cla_Chr06 FPKM 3.640693 2.361943 10.143585 10.763406 6.431131 5.66982 5.090697 2.048861 1.404314 1.776966