Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00643 ATGAAGCACCATCAAGATCAAGAAACCACCGCCACCTCCGCCGCTAGTACACTCAATTTCAAGTTTCCCACCACCTCCCATGGCTACACAATCATTACTCAGATCGGTGTCAGCCCCCACAGCATTGTGTACATGGCCAATTGCAAGTCGGAAGACTCGACCACCGTCACCGTCGCCATAAAGATTATCGATGTCGATAACAACATCAACCTCAATTCCCTGAACGCTTCACTATCACTCATCGACCACCCCAATATTTTCCGGCCACATTGTTGTTTCGTCGGCGACGATGCCCGCATTTGGATCGTCATGCCCTTCATTCCGACCGGCACTTTACAATCCATTCTGTCCCGCAGTTTCCCTAGAGGTATGCCAGATCAATTCACCTCCATTATTTTAAACCAACTCCTCCGTGCTTTAGTTTATCTTCACGAATTGGGGTTTGTTCATAAAGCCATTAAACCAAGTAATATCTTCTTCGATTCACAAGGCTCTGTTAAGCTCTCTGTTTTTGATATCATGATCTCCAAGAACAATATTAACAAAATTGATCATGATTCTTCAATTCCTTATTGGGTCCCACCGGATGAAGTATATTGTTTCGAATCAGATATTTGGGTACTTGGGGTTTTAGCTATGGAAATTACTTGGGGGGGTCCTCCAATTATAGACCCAAGACTTCTTGAATCACAATCGTTTAATATCTCAAGAAGGTTTCCCTATGAATTGAAAACAGAGAAGAGTGAGAGACAAAGGGACAGAAGATTATTTGGAGATGGTGTTAAAGAATTTGTGAAATGTTGCCTTGTCAAAAATCGGTTTGAAAGGCCGACGGCTTCGAGTTTGTTGAGTCATCCATTTGTGCAGAAAGGGGAAAAGCCGAATTTTTTATTCAAGAGTATTCCAAAAGGAGTGATTGACATTGATCAAAGATTTGAACAAGAAAAGGAAAGAATGATTGGGTTGATGAAAAATGATGAGAAATTGAAGATTGAAAGGGACAGGACTATGAAGATTAGAGGATGGGACTATAATAATTTTTTGTTCGAACTTGAACCTGATGAGGAATCAGTAGGGAAAAGAGTTCGATTTGGTGGGGAAATCGTAAGGCAATTTAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGCAAGAAAGTTGATGATATGTTATCTCTACTTCAGAAAATACAGAGTAATTTGAGTGGTGCTGGTGAATCAAGCAAGGCTGGTGAGAAGAAGAAGAAGATTGTTGATGAAAGTTTAGTGAAAATGTTATCTTCATTGTTTGGTAATATTGATCAACAAAGGGATATGGTTTTGAAGTTGATGAATCATCTTAGTTATTTGAGTGAAAAACAGTTGGAAATGAGTAATGAAATCAAAAGGTTAGAGGCAGATTTGGCTTCTGAGAAAGAAAGATACTTTCAATTAGAGTTGGAATGTGAGTTTCTAAAGCTAAAAGTTCCTGATTCTGAGGATGAAAACGAATATTCTGATGAGGAACAACAAGAATATTGGGAGTAG 1536 39.13 MKHHQDQETTATSAASTLNFKFPTTSHGYTIITQIGVSPHSIVYMANCKSEDSTTVTVAIKIIDVDNNINLNSLNASLSLIDHPNIFRPHCCFVGDDARIWIVMPFIPTGTLQSILSRSFPRGMPDQFTSIILNQLLRALVYLHELGFVHKAIKPSNIFFDSQGSVKLSVFDIMISKNNINKIDHDSSIPYWVPPDEVYCFESDIWVLGVLAMEITWGGPPIIDPRLLESQSFNISRRFPYELKTEKSERQRDRRLFGDGVKEFVKCCLVKNRFERPTASSLLSHPFVQKGEKPNFLFKSIPKGVIDIDQRFEQEKERMIGLMKNDEKLKIERDRTMKIRGWDYNNFLFELEPDEESVGKRVRFGGEIVRQFKKEEEEEEEEEEEESKKVDDMLSLLQKIQSNLSGAGESSKAGEKKKKIVDESLVKMLSSLFGNIDQQRDMVLKLMNHLSYLSEKQLEMSNEIKRLEADLASEKERYFQLELECEFLKLKVPDSEDENEYSDEEQQEYWE 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7924745 7926280 + ClCG06G006775.1 Cla06g00643 274835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00643 511 Coils Coil 369 393 - -
Cla06g00643 511 PANTHER SERINE/THREONINE-PROTEIN KINASE BLUS1 15 498 - -
Cla06g00643 511 SUPERFAMILY Protein kinase-like (PK-like) 26 300 IPR011009 -
Cla06g00643 511 Coils Coil 457 484 - -
Cla06g00643 511 Gene3D Transferase(Phosphotransferase) domain 1 25 326 - -
Cla06g00643 511 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 15 498 - -
Cla06g00643 511 ProSiteProfiles Protein kinase domain profile. 29 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00643 511 Pfam Protein kinase domain 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00643 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - cpep:111806976 459.529
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g00470 Cla06g00643 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00643 Cla-Chr6:7924745 Cla09g01858 Cla-Chr9:36281233 1.56E-43 dispersed
Cla05g00470 Cla-Chr5:4284570 Cla06g00643 Cla-Chr6:7924745 9.48E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g641 . . . . . . . . . . . Cma14g01789 . Car14g01610 . . Cpe03g01498 . . . . . . . Cla06g00643 Cam06g0688 Cec06g0690 Cco06g0697 Clacu06g0674 Cmu06g0665 Cre06g1433 . . . Cone4ag0304 Lsi05g01693 . Chy05g00345 Cme06g00521 . . . . . . . . . . Cmo14g01826 . . . Car17g00157 . . . . . . . . . Cla05g00470 Cam05g0511 Cec05g0525 Cco05g0526 Clacu05g0512 Cmu05g0488 Cre05g0552 Lsi09g01255 Csa03g01242 Chy06g00495 Cme05g00538
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014569 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 0 1 0 0 1 0 1 0 1 1 3 1 0 1 0 20
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80627 PF00069 Pkinase 6.10E-30 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00643 Cla_Chr06 FPKM 108.529648 126.123985 51.623528 55.446655 15.728043 11.545531 13.387124 43.508251 39.617863 41.553898