Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00647 ATGGTTGCAGAGCCTTGGATTGTGAAAATGGGGAACCAGGTTAGTGCTAATCTCAAACACGCCCTCCTCGAATCTTCTAAGAACAAGAACTCTAGAAAACCAGAAATCGGTGGCAATACTAAGCAAACAATCGGTATTCTCTCTTTTGAAGTTGCTAATGTAATGTCCAAAACGATTTACCTTCATAAATCCCTGTCTCATTCTGCCATTTCGAAGCTCAAGAACGAGATCTTGAGCTCCGATGGAGTTAAAAACCTTATCTCCTCTGATGAGGTTCATCTTCTCGAGCTTGTGGTTGCTGAGAAGCTTGAGGATTTAAACCGAGTGGCTAATGTGGTTTCTAGGCTTGGGAAGAAGTGTTCCCAACCTGCGTTACAAGGGTTTCAACATGTGTACTTGGATATCATTAATGGAGTTATAAATGTGAAGGAATTGGGGTTTCTAGTGAAGGATATGGAGGGGATGATGAAAAAAATGGAGAGGTATGTGAATGCTACGGCAAATTTGTACACTGAAATGGAGGTTTTGAATGAATTGGAACAGGCTGCAAAGAAGTTTCAGAACAATCAGCATGAAGAGAGCAAAAAGGCGTATGAACAGAAACTTATATGGCAGAAACAAGATGTGGGGCATCTCAAGGATATTTCTCTTTGGAACCAAACGTATGATAAGGTTGTTGAACTGCTGGCGAGAACTGTTTGTACAGTTTATGCGAGGATTCATTTAGTATTTGGGGACCCTTTTCTGAAGAAGGATGTGAATGAGAATGGTTCAAGTAATGATGTGAATCATCATGTTCAAAATGGTGCAGAGTTGATGGAATCGAAACGTGCGTCTGCCGAGAGAGGCCCTGGACCAAGACGGGGGTTGAGTATTAAGTCTCATATTAGCTCAAGAAGAGGTGAGGTTTCATTGCTTACAACTGATGACTTCAATTTCCCTTGTGGAACAAATCCTGGGAGGCTTCTCATGGATTGCCTTAGTTTAAGTAGTTCAGTTTCCAAGTTGTATGATGAGGATGATGACAGTTATGTTGACCGTGACGATCGAAGCTGCCAAACCTCCGGTCGTAGCATTAGGAACAGCGGTTCCAGCCAATTTAGTTCTTTCAGTCAGGTACAGTTCTCTATTCCATTTGGGGTGGATCAAAGACAAGCAAAAAGTGGGATGTCTAACAGTGGAGGAAACTTTGGCCTCAAGAGTAGGTTATCTATCTACGCACCGGTTTCAACCATCGGAGGCTCTGCTCTTGCTTTGCATTATGCAAATATCATCATTGTCATTGAAAAGTTACTTCGTTATCCTCATTTAGTTGGTGACGAAGCTCGAGACGATTTGTATCAGATGCTACCAACAAGTTTAAGATCATCCCTGAAAACACATTTGAAATCTTATGTTAAGAACCTGGCCATATATGATGCTCCTCTTGCCCATGATTGGAAGGAGACTCTCGATGGGATCTTGAGCTGGCTCGCTCCGTTGGCACACAACATGATTCGGTGGCAAAGCGAGCGTAATTTCGAACAACATCAGATTGTGACTCGAACAAATGTATTGCTGATCCAAACTTTGTATTTTGCTGATCGCAAGAAGACTGAGGAAGCCATATGTGAGCTTCTTGTTGGATTGAATTACATTTGCCGCTACGAGCATCAGCAAAATGCATTGCTGGATTGTGCAAGTAGTTTCGACTTTGAAGATTGTATGGAGTGGCAGTTGCAATGTAAAGCTTCCTTGAGCACACTGAAAGACATGATTGATGGGGACTTCAATTCGTCACTGTTTGCTGTTGAGAGGGAGCACCGTTCTTCTAGATCTGCTCTCTTTGATGACCTTGAGGAGGGTGGTCTCAGGACTAGCTCTTCCGTTGAAATTAAAGAGCATGACAATGATAAAGCCCTCCATACTTTGGAAGATAGAGTTTCTATTCTCAAGAGGTTTTCATTTCCAGCAAAAAGGAAGTCTGATCCCCCTCCCGGGATTTGTCTTCTTGATCCAGCAGCTCTTGATGGAAATGGCATGGATGCGTCAAGGGGTATAATGTCAAGAACCATGGATCGATTCAAGATGGTTTTCGAGCAAAAATCAAAGTGGAGAACTTGTAGACTTGCGTTGTATTTTGTGTTGTCCTTTCTACTACTTTTCTATCTCATCAGAAAGTATGCATGCTATCCATGCTGTTTGGTCGAGGTCAATCGGTTGGGCTTTCCGGCCACCGGCCCAATATCAACCACCGTTGACGGCAGTGGAAGAGATCATGACGACGACGAAGACGAGCCAAATGGAGGCGGCGTGGTGGTCGGAAACCGCCGATCGAGAGGACGGCCACCGGGATCGAAAAACAAACCAAAATCTCCAATCATCGTCACGAGCGACAACCCTCACGCGCTTCGCACGCACGTGATCGAGATCATCGTAGGAGCCGACGTCGCCGGCAGCATAAAGCAATTCTCCTGCCGCCGACAACGTGGGGTTTGTGTTCTCAGTGGCGGCGGTACGGTTGTGGACGTAACTCTCCGGCAATCCGCCGGTTCTGCCGCCGTGATCCAACTTCACGGCCGCTTCGATATTCTATCTCTAAGTGGGTCTTTTCTTCCCGGTCGAGCCCCTCCCTGTTCGACCGGGCTGACCGTGTACTTGTCGGGCGGTGAGGGGCAGGTGATTGGAGGGACGGTGGTGGGCCCATTGTTGGCAGCTGGGCCTATAATTTTGATAGCTGCTACTTTTGCTAGTGCTACTTATGAGAGATTGCCTTTACAAGACGACCATAATAATCAAGAAAGAGAGATTTCTCCGGCCACCACGGGCGGCGGAGAAGTGGAGGAGCCGCCGCAGTTTACTCGGATGGCAACTTCAATTTACGACTTGATGTCACCAAATGATCATGATGGAGTTGATGGGTATGGTTGGGCTCATGAGAGACCATCTTTTGTTTAA 2937 45.62 MVAEPWIVKMGNQVSANLKHALLESSKNKNSRKPEIGGNTKQTIGILSFEVANVMSKTIYLHKSLSHSAISKLKNEILSSDGVKNLISSDEVHLLELVVAEKLEDLNRVANVVSRLGKKCSQPALQGFQHVYLDIINGVINVKELGFLVKDMEGMMKKMERYVNATANLYTEMEVLNELEQAAKKFQNNQHEESKKAYEQKLIWQKQDVGHLKDISLWNQTYDKVVELLARTVCTVYARIHLVFGDPFLKKDVNENGSSNDVNHHVQNGAELMESKRASAERGPGPRRGLSIKSHISSRRGEVSLLTTDDFNFPCGTNPGRLLMDCLSLSSSVSKLYDEDDDSYVDRDDRSCQTSGRSIRNSGSSQFSSFSQVQFSIPFGVDQRQAKSGMSNSGGNFGLKSRLSIYAPVSTIGGSALALHYANIIIVIEKLLRYPHLVGDEARDDLYQMLPTSLRSSLKTHLKSYVKNLAIYDAPLAHDWKETLDGILSWLAPLAHNMIRWQSERNFEQHQIVTRTNVLLIQTLYFADRKKTEEAICELLVGLNYICRYEHQQNALLDCASSFDFEDCMEWQLQCKASLSTLKDMIDGDFNSSLFAVEREHRSSRSALFDDLEEGGLRTSSSVEIKEHDNDKALHTLEDRVSILKRFSFPAKRKSDPPPGICLLDPAALDGNGMDASRGIMSRTMDRFKMVFEQKSKWRTCRLALYFVLSFLLLFYLIRKYACYPCCLVEVNRLGFPATGPISTTVDGSGRDHDDDEDEPNGGGVVVGNRRSRGRPPGSKNKPKSPIIVTSDNPHALRTHVIEIIVGADVAGSIKQFSCRRQRGVCVLSGGGTVVDVTLRQSAGSAAVIQLHGRFDILSLSGSFLPGRAPPCSTGLTVYLSGGEGQVIGGTVVGPLLAAGPIILIAATFASATYERLPLQDDHNNQEREISPATTGGGEVEEPPQFTRMATSIYDLMSPNDHDGVDGYGWAHERPSFV 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7991313 8005381 - ClCG06G006820.2 Cla06g00647 274839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00647 978 MobiDBLite consensus disorder prediction 742 789 - -
Cla06g00647 978 Pfam Domain of unknown function (DUF3475) 46 102 IPR021864 GO:0045927
Cla06g00647 978 CDD DUF296 798 909 IPR005175 -
Cla06g00647 978 SUPERFAMILY AF0104/ALDC/Ptd012-like 796 922 - -
Cla06g00647 978 Pfam Protein of unknown function (DUF668) 411 500 IPR007700 GO:0045927
Cla06g00647 978 Coils Coil 176 196 - -
Cla06g00647 978 ProSiteProfiles PPC domain profile profile. 794 933 IPR005175 -
Cla06g00647 978 Pfam Plants and Prokaryotes Conserved (PCC) domain 798 910 IPR005175 -
Cla06g00647 978 Gene3D - 797 927 - -
Cla06g00647 978 PANTHER PLANT/PROTEIN (DUF668) 1 575 - -
Cla06g00647 978 MobiDBLite consensus disorder prediction 919 943 - -
Cla06g00647 978 PANTHER BNAC09G50660D PROTEIN 1 575 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00812 Cla-Chr5:7944866 Cla06g00647 Cla-Chr6:7991313 1.62E-40 dispersed
Cla06g00029 Cla-Chr6:337812 Cla06g00647 Cla-Chr6:7991313 4.67E-65 dispersed
Cla06g00647 Cla-Chr6:7991313 Cla10g01850 Cla-Chr10:34422637 2.59E-74 dispersed
Cla10g00170 Cla-Chr10:1791806 Cla06g00647 Cla-Chr6:7991313 1.63E-60 dispersed
Cla08g01418 Cla-Chr8:27055310 Cla06g00647 Cla-Chr6:7991313 2.54E-13 transposed
Cla09g00971 Cla-Chr9:10206646 Cla06g00647 Cla-Chr6:7991313 1.36E-14 transposed
Cla02g01662 Cla-Chr2:31457488 Cla06g00647 Cla-Chr6:7991313 1.73E-75 wgd
Cla05g00466 Cla-Chr5:4205509 Cla06g00647 Cla-Chr6:7991313 2.20E-15 wgd
Cla06g00647 Cla-Chr6:7991313 Cla07g00083 Cla-Chr7:945749 3.80E-24 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00647 - - csv:101220789 1056.59