Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00651 ATGAGCAGCCATTTACAAGTTTTCAATTCTTACGATCGCCAAGCAGAGCTCAAAGCTTTCCACAACACCAAATTGGGAGTAAAGGGTGTGGCCGATTCCGGCGTTACCAAAATCCCAAAAATCTTCAGCCACGACAATCAATCCCCCTCCCTCATCACCTCCCCTGCAGCTGCAGCGGCGGAGAAATTAGCAGGCGAAACAGAGGCCAAGAATTTAACAATCCCTATTATCGATCTCGAACAAACCCAGAAAAACAGAGCAAAAGTAATCAACGAAATCAGAGAAGCCAGCGAAAATTGGGGATTTTTTCAAATCCTCAACCATGGGGTTCCGTTAGCCGTTATGGACGAGATGATGAACGGAATCCGGCGGTTTCACGAGCAGGACGACGAAATGAAGAAGGATTTGTATTCGAGAGATTTTCAGAGGAAGGTTCTTTTTAATACTAATTTCGATTTGTTCAAAGGGGTTTCGACGAATTGGAGGGACACGTTGACGGTGGTGGTGGCGCCGCGTGGGGCGGAGGCGGAGGATTTTCCGGTGGTTTCTAGGGAGGCTGTGATGGATTACTCGAAAAGGGTGATGGAATTGGGGGGAGTTTTGCTGAAATTGTTGTCGGAGGGATTAGGGGTGGCGCCAAATCGGCTGAAGGAGTTGGGTTGTGGAGAGGGAATGGTAATGTTTTGCCATTATTATCCGCCGTGTCCTCAGCCGGAACTCACTTGGGGAACCACCGAGCATACGGATAGTAGTTTTCTGACGGTGCTGTTGCAGGATGACTTTGGCGGCCTTCAAGTCCGCCATGGAGATCGATGGGTGGATGTTCATCCCATTAAAGGAGCTTTTGTTGTAAACATTGGCGATTTCATGCAGATGATGTCCAATGATAAGTTCAAAAGTGTGAATCATAGGGTTTTAGCAAATAAGGGAGGGCCAAGAATTTCAGTGGCAAGTTTTTTTAGGTGCAATCTTCCACCAGAAAATGGTTTAGTTTTTGGACCAATTAAGGAGTTAAGTTCAGAGGAAAATCCAGACATTTATAGAGAAACATCCATCAAAGACTATGTGGGTCACTACTATAAAAAAGGCCTCAATGGCATCTCTGCCCTTGAACACTTCAAACTTTGA 1128 46.01 MSSHLQVFNSYDRQAELKAFHNTKLGVKGVADSGVTKIPKIFSHDNQSPSLITSPAAAAAEKLAGETEAKNLTIPIIDLEQTQKNRAKVINEIREASENWGFFQILNHGVPLAVMDEMMNGIRRFHEQDDEMKKDLYSRDFQRKVLFNTNFDLFKGVSTNWRDTLTVVVAPRGAEAEDFPVVSREAVMDYSKRVMELGGVLLKLLSEGLGVAPNRLKELGCGEGMVMFCHYYPPCPQPELTWGTTEHTDSSFLTVLLQDDFGGLQVRHGDRWVDVHPIKGAFVVNIGDFMQMMSNDKFKSVNHRVLANKGGPRISVASFFRCNLPPENGLVFGPIKELSSEENPDIYRETSIKDYVGHYYKKGLNGISALEHFKL 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8071804 8074860 + ClCG06G006870.1 Cla06g00651 274843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00651 375 Coils Coil 79 99 - -
Cla06g00651 375 SUPERFAMILY Clavaminate synthase-like 24 365 - -
Cla06g00651 375 Pfam 2OG-Fe(II) oxygenase superfamily 226 320 IPR044861 -
Cla06g00651 375 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE HOMOLOG 1-LIKE 7 374 - -
Cla06g00651 375 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 223 324 IPR005123 -
Cla06g00651 375 Pfam non-haem dioxygenase in morphine synthesis N-terminal 74 166 IPR026992 -
Cla06g00651 375 Gene3D - 17 357 IPR027443 -
Cla06g00651 375 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 7 374 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00651 - - - csv:101220285 636.336
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00458 Cla-Chr5:4106043 Cla06g00651 Cla-Chr6:8071804 2.04E-69 dispersed
Cla06g00651 Cla-Chr6:8071804 Cla09g00710 Cla-Chr9:6957134 3.12E-97 dispersed
Cla06g00651 Cla-Chr6:8071804 Cla06g00652 Cla-Chr6:8080236 5.71E-22 tandem
Cla07g00549 Cla-Chr7:8855632 Cla06g00651 Cla-Chr6:8071804 4.89E-101 transposed
Cla05g00457 Cla-Chr5:4105725 Cla06g00651 Cla-Chr6:8071804 2.10E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g654 . . . . . . . . . . . . . . . Cpe08g00326 . . . . . . . . Cla06g00651 Cam06g0697 Cec06g0700 Cco06g0709 Clacu06g0683 Cmu06g0674 Cre06g1443 . . . . . . . . . Blo07g00254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01229 . Cme05g00550
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000120 1 1 3 2 2 1 5 9 8 1 3 7 6 4 12 8 7 4 4 8 9 14 11 13 12 12 11 13 13 18 222
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00651 Cla_Chr06 FPKM 19.009901 15.637973 8.920868 9.580646 12.22253 8.132792 10.093795 12.377278 12.58186 12.789474