Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00659 ATGAATTCTTCATTCTTTCACTCCCAAAACGCCGATCTCTCGCCGGAATCTTCCTTTGGCTCCTTCGAATCCCTCCGATGGGAAGGTTTTCAAATAAACGGCAACTCTCTGCCCTTCAACGAGAATGATTCCGGAGAAATGCTCCTTCACAGCTTAATCTCCGAGGCTGCCGTGTACCCGCCGGAGAATTCCCCCCGGCAGCCTCCGATCAAAGACGAGGAGGTTGATTCGCTTGGAGAAGAAGACCCCCACAAGAGAAAGTCATACAGAGGAGTCCGCCGGCGACCGTGGGGAAAATTCGCGGCGGAGATACGAGACTCGACCCGACATGGGGTTCGGGTTTGGCTCGGGACATTCGACAGCGCCGAGGCGGCTGCTTTGGCCTACGATCAAGCTGCTTTTTCAATGAGAGGCCCTGCTGCCGTTCTGAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTCAAGGAGATGGAGATGATCAACTCCGCCGCATACGGAGGCGATGGCGAGGGAGACAGCGGATCTCCGGTGGTGGCTCTGAAGAGAAAACACTCTATGAGGAAGAAATTCACGAGAAGAAAGAGCAAAGAGAGAGATGGGATTGAGAAGATTGAGAATAATGTGGTAGTTTTGGAAGATCTTGGCTCTGATTATTTGGAAGAACTTCTAAAGTCGTCGGAGAATCTCCGACCGTGGTGA 699 52.07 MNSSFFHSQNADLSPESSFGSFESLRWEGFQINGNSLPFNENDSGEMLLHSLISEAAVYPPENSPRQPPIKDEEVDSLGEEDPHKRKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGPAAVLNFPVERVQESLKEMEMINSAAYGGDGEGDSGSPVVALKRKHSMRKKFTRRKSKERDGIEKIENNVVVLEDLGSDYLEELLKSSENLRPW 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8186126 8186824 + ClCG06G006935.1 Cla06g00659 274851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00659 232 CDD AP2 87 147 IPR001471 GO:0003700|GO:0006355
Cla06g00659 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 32 225 - -
Cla06g00659 232 Pfam AP2 domain 88 138 IPR001471 GO:0003700|GO:0006355
Cla06g00659 232 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Cla06g00659 232 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Cla06g00659 232 MobiDBLite consensus disorder prediction 67 87 - -
Cla06g00659 232 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Cla06g00659 232 MobiDBLite consensus disorder prediction 59 91 - -
Cla06g00659 232 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
Cla06g00659 232 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677
Cla06g00659 232 PANTHER DNA-BINDING DOMAIN 32 225 IPR044808 GO:0003700|GO:0009873
Cla06g00659 232 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00659 Cla-Chr6:8186126 Cla09g00720 Cla-Chr9:7074746 6.50E-35 dispersed
Cla05g00451 Cla-Chr5:4029809 Cla06g00659 Cla-Chr6:8186126 4.26E-81 wgd
Cla06g00659 Cla-Chr6:8186126 Cla07g00093 Cla-Chr7:1058226 1.93E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61263 PF00847 AP2 6.00E-15 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00659 K14516 - csv:101206564 401.364