Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00671 ATGAAGACAGAGTGTTCCTCTTCTTCACTGCTGCTTCTTCTTCACCCGAAATCGCGGGCCGTACATTTCCTTACTCTCTTCTCTAGGGTTTCGCTTCGCTTCGCTCCGCTTCTCATTGCTTTCCTGCTGTTTTTTCTCGGACAAGTTGTACGAATGGAAGCTACTAGGTGTTGGTTTAATAAGTTTAGATCCAAAGACAAGCCAAAGCCCTCAACAAATAAGGAGAGTACAGGCAATGCAAGAGATGCATCAAGAGCACCAACTAGTGAAGATGTACCCTCAAATGTGACCAAGCAGAAGGTTGCAGCTGCCAAGCAGTACATAGAAAACCATTACAAGAAGCAAATGAAGAGCTTGGAAGAAAGGAGGGAGAGACGCCATGTACTGGAAAAGAAGTTGGCTGATGCTGAGGTCTCTCAGGAAGAGCAAAGCAACCTGCTCAAGCATCTAGAGAAGAAGGAAACAGAGTATATGCGTCTTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCACTAACAATGATAGGGAGGGGTGCTTTTGGAGAGGTTAGAGTTTGTCGGGAGAAAGCAACTGGCCATGTATATGCCATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAACACGTGAAAGCTGAAAGGAATCTATTGGCGGAGGTTGACAGTAATTGTATTGTAAAGCTGTACTGCTCTTTCCAAGATGAAGAGTATTTATATCTTATTATGGAATACTTACCTGGTGGAGATATGATGACTTTGCTGATGAGGAAAGATACTCTAACCGAAGACGAGGCTCGGTTTTATGTTGGTGAAACAGTTTTAGCTATCGAGTCAATCCATAAACATAATTATATTCATAGAGATATCAAGCCGGATAACTTACTTCTTGACAAGGACGGCCATATGAAATTATCAGATTTCGGATTATGTAAACCATTAGATTGTAGTAACCTCCAAGAAAAGGATTTTTCCCAGGGAAGTAACCTCAGTGGTGCTCTTCAAAGTGATGGGCGTCCTGTGGCATCAAAACGCACACAACAGGAACAACTGCAGCATTGGCAAAGGAATAGGCGGATGCTTGCTTATTCAACAGTTGGAACTCCTGATTATATTGCCCCGGAAGTTTTGTTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCACTTGGTGCCATCATGTACGAAATGCTTGTGGGATTCCCACCGTTTTACTCAGATGAGCCAATGTCAACTTGCAGGAAGATAGTTAATTGGAGAACTCATTTGAAATTTCCAGAAGAAGCAAAGCTCTCTCCAGAAGCGAAGGATCTAATTAGTAAACTCTTATGCAATGTTGAACAAAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCACACCCGTGGTTCAAGGGCATTGAGTGGGATAAGTTGTATCAAATGAAAGCTGCATTTATTCCTGAGGTCAATGATGAATTGGATACTCAAAACTTTGAGAAGTTTGAAGAGACTGAAAACGCAATTCAAACTTCATCAAAATCAGGTCCATGGAGAAAGATGTTGTCATCGAAGGATATCAATTTTGTTGGTTATACGTACAAAAACTTTGAAATCATTGATGATAATCAATTGCCTGGAATCGCTGAACTGAAGAAGAAGACCGCAAAATCTAAAAGACCTTCCATCAAATCACTTTTTGATAACGAATCTGCAATGGCTAATCAACCTGTTCAAGGAAGCTTTCTGAAACTCTTGCCTCCCCAACTAGAAGTCCCTGAGAAACTGATGAGCGCCAATGAGAAGCATTCATAA 1809 41.68 MKTECSSSSLLLLLHPKSRAVHFLTLFSRVSLRFAPLLIAFLLFFLGQVVRMEATRCWFNKFRSKDKPKPSTNKESTGNARDASRAPTSEDVPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERRHVLEKKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGSNLSGALQSDGRPVASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGFPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENAIQTSSKSGPWRKMLSSKDINFVGYTYKNFEIIDDNQLPGIAELKKKTAKSKRPSIKSLFDNESAMANQPVQGSFLKLLPPQLEVPEKLMSANEKHS 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8500197 8508215 + ClCG06G007050.2 Cla06g00671 274863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00671 602 SUPERFAMILY Protein kinase-like (PK-like) 145 522 IPR011009 -
Cla06g00671 602 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 92 571 - -
Cla06g00671 602 Gene3D Phosphorylase Kinase; domain 1 488 498 - -
Cla06g00671 602 Coils Coil 119 153 - -
Cla06g00671 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
Cla06g00671 602 Gene3D Transferase(Phosphotransferase) domain 1 368 487 - -
Cla06g00671 602 ProSiteProfiles Protein kinase domain profile. 170 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00671 602 SMART pkinase_C_6 470 534 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cla06g00671 602 SMART serkin_6 170 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00671 602 Pfam Protein kinase domain 172 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00671 602 MobiDBLite consensus disorder prediction 65 97 - -
Cla06g00671 602 Gene3D Phosphorylase Kinase; domain 1 168 253 - -
Cla06g00671 602 ProSitePatterns Protein kinases ATP-binding region signature. 176 199 IPR017441 GO:0005524
Cla06g00671 602 PANTHER SERINE/THREONINE-PROTEIN KINASE 92 571 - -
Cla06g00671 602 MobiDBLite consensus disorder prediction 73 97 - -
Cla06g00671 602 Gene3D Transferase(Phosphotransferase) domain 1 254 320 - -
Cla06g00671 602 CDD STKc_NDR_like 168 533 - -
Cla06g00671 602 ProSiteProfiles AGC-kinase C-terminal domain profile. 470 542 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cla06g00671 602 Pfam Protein kinase C terminal domain 488 532 IPR017892 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02478 Cla-Chr1:38435227 Cla06g00671 Cla-Chr6:8500197 0 dispersed
Cla04g01254 Cla-Chr4:27676085 Cla06g00671 Cla-Chr6:8500197 7.63E-22 dispersed
Cla04g01257 Cla-Chr4:27694941 Cla06g00671 Cla-Chr6:8500197 7.51E-12 dispersed
Cla05g01850 Cla-Chr5:30387124 Cla06g00671 Cla-Chr6:8500197 0 dispersed
Cla06g00671 Cla-Chr6:8500197 Cla09g00744 Cla-Chr9:7341099 0 dispersed
Cla06g00671 Cla-Chr6:8500197 Cla03g01479 Cla-Chr3:30288766 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80628 PF00069 Pkinase 1.20E-65 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00671 K08790 - csv:101205120 1098.96