Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00680 ATGAACACGCATAGTTGCTCAAAACAATACAGTAGAAGGAGTAAAAAGCAGACCCAGAGCAACTCTAATGATGAAAGTGCAGCTCGAACTAGGCCACTCAGCTTTGAAGACATTATGCTTAGAAGGAAGAATAAAGGGTCAGCTGCTACTGTTGAGGTGGGTGCCACTGGTAGCCATTCAAGAAGGGAAAGCATAGATAAGCACAGTACTGATAATCGTGCATCTGAAAGGAATCTTCGTCACAGTAAAGGTTCTTCTCTTGATGTGCAAAACCTCTCAATTGAGGAATCAGCCAAAGATAGTTCAAGAAGGAAAAAAGAGGAGACATTGTTGAAGGACAATATGGTGGTTAGGAGTGATAGAAATAATTATGAATCTGGATTGTCACTGATGAGTAAGCTTAAATACGACAGGAATGGAAAGGATAAAATAGAGAAATATGGCCAGGAAAATCTTGGTTGGGGAAAAAATGACCAGAGTTCTAGAATTGATATTGAAACTGAAACTGGAAAGAGGCATTCAAGAGATACAGCTGGCAAGGATAGACGTGAAGATCATGGTAGGGGGAAATTTGAAAGAGAAAATAAGAGAAAATCTCAAAATGGTGATGATGACAGGAATAGAGACAAGTACATTGCAAAGAGACATGATCATGGCAAACATCATGACCTAGAAAATAGAGAAAGAAAGGAAGCTAAAGTATCATTGACTTCACATTATGAAGATTCTAGATTGAAAAGAAGACGGAAAAGAAGCCGAGATCGTGAAAGTAAACATAGAAGATCTGTTTCACTTTCTCCAAGACCTCACAAGCACTCAACTAAGTTAGCTAGGCAGAAGGAGTTGCCATTAGATTCTCATGTAAAGAAGTCTGGAAGATGGCGTTCTGATAGTGATAGAACAGGGGATTTTACCAACACTTCCAATAGCCAATACCGGCGACATTCTGGGTCCACAAGTGGGCTTGGTGGCTATTCACCTAGAAAGAGAAGAACTGAATCTGCTGTCAAGACTCCTTCACCTGCTCGATCACCAGAGAAGAAAAATGAAGTGTTGGATGTTCCTCCAACAGAAAAGGTTAAATTATTTTCTGGCTCAGTTACTTCCAACTTCCAGCCGCCAAATCCTACTGTTTCCTTGGGCATTAGTAATGATCAATCTGGTGGTGCACTCTTTTCTTCTGCTATGGGGAAATCTTTATCAGGGGTTTCTTCAAACAATATAGCAATGAAGACAAAGGTTTCTCTTGATTTGATTCAGCTGACCCAAGCTACTCGGCCGATGAGGAGGCTTTATATTGAAAACTTACCACATTCTGCATCTGAGAAAGCAATCATTGATTGCCTGAATGGTTTTCTTACGTCTTCAGGTGTTAATCACATTGAAGGAACCCAGCCGTGTATTAGTTGTATTATACACAAAGATAGGGCGCAAGCTCTTGTCGAATTTCTTACACCTGAGGATGCTTCAGCAGCTCTTTCGTTTGATGGAAGTGACTTCTCTGGCTCTATTCTAAAGATTCGGCGACCAAAAGATTATATCGAAATTGTATACATTGTGCCAGTAGCTCAGGATTTAGATGAAATTGTCTTACTTTCTGAGGTCTATTGTGGTTACTATCATGTAGCAGGTTTTCAGACAGTTGCTATTTTCATGCAGACTGGTGACCTGGACAAGTCGGTGCCGGTAGTAAATGAAATCAGTGATGTTGTCGAGGACTCACCAAACAAGATTATTGTTGCTGGGATCTCAAATAGAATATCATCTGAAATGCTTAGGGATATTGTTACTGCATTTGGATGTTTGAAGGCCTATCACTTTGAGATGAATGATGATATTAATGAACCTTGTGCCTTTTTAGAGTACGTTGACCAATCAGTTGTGTCCAAAGCCTGTGCTGGTCTGAATGGTATGAAGATTGGAGGGGAAGTACTGAAAGTGTTTCCAGCTGTTCCTTTTGCATCAACGGAACGTAATGGATGTCAACCATGTTATGGGATCCCAGAGCATGTTAAACCTCTTCTTCAACAGCCATCAGTAGTGTTAAAAGTTAATAATGTGTGTTATGTGCAATCTTCTGATTGGGCGTTCACTTTTTGGACCCAGTTTAATGCAGATGTCCTCCCAGTACTCTCTGAGTCAGATATTGACGAAGTTCTTGAAGATATTCGGTTTGAATGTGCTAGGTTTGGAACTGTTAAATCCATGAATTTTGTAAAGCCATGCAATGGCTGTGTCAGTGCGGAAGAAGAATACAAGAAAATTAGCGATGATGTCACTGATGTGGAGATCAAACATGAGATTCAGGAAAACAGTACAATGGTGATTTCAAGAAACAATAATGATCTTGAAGATAACTACGCTAACCTTGATAATTGCCCCAATGATACCAATCAGAAGCAGGTTAATTCCCCTAGCAATGGTAGACGTCAGGATGAAGGTATGGAGGACAAATTCTGTCAAATGGGTAACGATGATGCTACATGTTTTGAATTTGTAGCTCGTGAGAATGCTTCAGAAAGAATCCCTCAAGGACTCTCTGACCAGCGAAGCAGCCCAGAAAATGAACTTCAGAATGCAAAAGTAGCTGAAATAATTGAAACTGATGAAACTGGCTCGGACAAGAAATCGGTTTGTCTAGATTCACCTATGGTGGTGGATGATAATGAGAAGAAAGCTCTAAATGGATTGGATCCCATGGTGAGAACAGGTTCTGATGCATCTGATAAAAGCGAAAAGAAGGATCCTAATAATAATCTGGAGAGTTTATTTGTGTTGGGGAGTGTCTTTGTCGAGTTTGGCAGAATGGAAGCCTCGTGTATGGCTGCACATTCTTTACATGGTAGGATTTATGATGGACAAGAGATTAGCATCGAGTACATTCCCTACGATGTCTATCGGAAGAGGTTTCCTAAATGA 2919 40.32 MNTHSCSKQYSRRSKKQTQSNSNDESAARTRPLSFEDIMLRRKNKGSAATVEVGATGSHSRRESIDKHSTDNRASERNLRHSKGSSLDVQNLSIEESAKDSSRRKKEETLLKDNMVVRSDRNNYESGLSLMSKLKYDRNGKDKIEKYGQENLGWGKNDQSSRIDIETETGKRHSRDTAGKDRREDHGRGKFERENKRKSQNGDDDRNRDKYIAKRHDHGKHHDLENRERKEAKVSLTSHYEDSRLKRRRKRSRDRESKHRRSVSLSPRPHKHSTKLARQKELPLDSHVKKSGRWRSDSDRTGDFTNTSNSQYRRHSGSTSGLGGYSPRKRRTESAVKTPSPARSPEKKNEVLDVPPTEKVKLFSGSVTSNFQPPNPTVSLGISNDQSGGALFSSAMGKSLSGVSSNNIAMKTKVSLDLIQLTQATRPMRRLYIENLPHSASEKAIIDCLNGFLTSSGVNHIEGTQPCISCIIHKDRAQALVEFLTPEDASAALSFDGSDFSGSILKIRRPKDYIEIVYIVPVAQDLDEIVLLSEVYCGYYHVAGFQTVAIFMQTGDLDKSVPVVNEISDVVEDSPNKIIVAGISNRISSEMLRDIVTAFGCLKAYHFEMNDDINEPCAFLEYVDQSVVSKACAGLNGMKIGGEVLKVFPAVPFASTERNGCQPCYGIPEHVKPLLQQPSVVLKVNNVCYVQSSDWAFTFWTQFNADVLPVLSESDIDEVLEDIRFECARFGTVKSMNFVKPCNGCVSAEEEYKKISDDVTDVEIKHEIQENSTMVISRNNNDLEDNYANLDNCPNDTNQKQVNSPSNGRRQDEGMEDKFCQMGNDDATCFEFVARENASERIPQGLSDQRSSPENELQNAKVAEIIETDETGSDKKSVCLDSPMVVDDNEKKALNGLDPMVRTGSDASDKSEKKDPNNNLESLFVLGSVFVEFGRMEASCMAAHSLHGRIYDGQEISIEYIPYDVYRKRFPK 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8657280 8666734 - ClCG06G007140.1 Cla06g00680 274872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00680 972 MobiDBLite consensus disorder prediction 1 126 - -
Cla06g00680 972 PANTHER RNA-BINDING PROTEIN 1 969 - -
Cla06g00680 972 MobiDBLite consensus disorder prediction 893 917 - -
Cla06g00680 972 SUPERFAMILY RNA-binding domain, RBD 567 656 IPR035979 GO:0003676
Cla06g00680 972 MobiDBLite consensus disorder prediction 97 119 - -
Cla06g00680 972 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 576 652 IPR000504 GO:0003723
Cla06g00680 972 MobiDBLite consensus disorder prediction 147 355 - -
Cla06g00680 972 MobiDBLite consensus disorder prediction 59 83 - -
Cla06g00680 972 Gene3D - 568 658 IPR012677 -
Cla06g00680 972 MobiDBLite consensus disorder prediction 789 814 - -
Cla06g00680 972 SUPERFAMILY RNA-binding domain, RBD 715 969 IPR035979 GO:0003676
Cla06g00680 972 MobiDBLite consensus disorder prediction 789 809 - -
Cla06g00680 972 MobiDBLite consensus disorder prediction 161 243 - -
Cla06g00680 972 MobiDBLite consensus disorder prediction 276 300 - -
Cla06g00680 972 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 969 - -
Cla06g00680 972 SMART rrm1_1 430 508 IPR000504 GO:0003723
Cla06g00680 972 SMART rrm1_1 577 648 IPR000504 GO:0003723
Cla06g00680 972 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 429 512 IPR000504 GO:0003723
Cla06g00680 972 Gene3D - 858 972 IPR012677 -
Cla06g00680 972 Gene3D - 427 517 IPR012677 -
Cla06g00680 972 MobiDBLite consensus disorder prediction 301 325 - -
Cla06g00680 972 SUPERFAMILY RNA-binding domain, RBD 411 512 IPR035979 GO:0003676
Cla06g00680 972 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00680 K12837 U2AF2; splicing factor U2AF 65 kDa subunit - csv:101213128 1219.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00408 Cla-Chr8:12210967 Cla06g00680 Cla-Chr6:8657280 1.03E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g750 Blo01g00297 . . . . . . Bma05g01247 Cmo08g01045 Cmo17g00150 . . . . . . . . . . . . . . Cla06g00680 Cam06g0733 Cec06g0740 Cco06g0749 Clacu06g0725 Cmu06g0709 Cre06g1483 . . . . . Csa02g01043 Chy05g00306 . . . . . Bpe05g01101 . . . Sed04g2009 . . Cma08g01072 Cma17g00150 Car08g00945 Car17g00132 Cpe12g00127 Cpe17g00206 Bhi12g01590 Tan06g2386 Cmetu05g1606 . . . Lcy13g0392 . . . . . . . Lsi09g01218 . . Cme05g00588
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008034 0 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 2 1 1 2 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00680 Cla_Chr06 FPKM 53.600731 49.531666 83.781761 75.966408 37.825401 38.243793 39.737648 122.112976 160.103943 153.868256