Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00690 ATGGCGTCACTAGCAACGCATCTCTCCGCCTCCCTTTTCCTCGTCCCCATTGGCCTTCGTCGGCTCCTCTCTTCTTCCTCCATTTACCTCAAAAACCCATCTCTTTACCGATCAAAAACCTGGTACTTATCAGAACCCAAATGGAAGAATTTCGATTTATATTCCCTCATCCTCCTCCTCCCCATCGCCGCCTTCTCTGAAGTTTTCCTTTTCCTCGCTTTTTCCGGAAACCCCACTTACAGATTCTCCTTCTCCCAGCAATCAGTTGCCATTTTCTTTTTCTGGGCACTCGCCATTCTCATCATTTTGCGGGAAAATGTCGACTCTCTTCTTGTAAGTGAGAGTTTCATCTTCGTTTTCGCTGGGATCGCGTTTCTTGTTGAGTATTCTGTGATTGGCAAGGGGATTACTGGTCTTGGTGGCGCTTTTTATCGCATTTCTGGAGGATTAACCCTTCTTTGCGCTTGTTCCTGCTTGTATTTGTCTATGAAACCATCTGCATTTTTCGCTGAATTTCTACTTTCCTCTGGTTTATCGTTTAAGGGTACATGGATGTTTCAAGTTGGGTTGTCTTTGTATACCAATGCATTTCACTTGAAGGGTTGTCGTGCAATGTTGGTCTTGCCTGCTACTGGAGATGCTTTTGTACATTGTGATCTTGAGGAAGATGGTCTGCGGGGCATTGCTTTGATGAATCTAATTTTCATTGGCCATGCATTTTTAGTTTTGATCTTGGGTTTAGGTTTGATTGCCTTATTGTCCAGCAACAGGAAATTGAGGTTCGGCGAGGGAAATGGCCCATTGTTGGCTGAGCTTGGACCAGATACTATGTTGATTCGCTCATCCCCTGAGATTGAAATGGAGTGA 867 44.64 MASLATHLSASLFLVPIGLRRLLSSSSIYLKNPSLYRSKTWYLSEPKWKNFDLYSLILLLPIAAFSEVFLFLAFSGNPTYRFSFSQQSVAIFFFWALAILIILRENVDSLLVSESFIFVFAGIAFLVEYSVIGKGITGLGGAFYRISGGLTLLCACSCLYLSMKPSAFFAEFLLSSGLSFKGTWMFQVGLSLYTNAFHLKGCRAMLVLPATGDAFVHCDLEEDGLRGIALMNLIFIGHAFLVLILGLGLIALLSSNRKLRFGEGNGPLLAELGPDTMLIRSSPEIEME 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8826022 8826888 - ClCG06G007203.1 Cla06g00690 274882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00690 288 PANTHER OS11G0534100 PROTEIN 1 285 - -
Cla06g00690 288 PANTHER PROTEIN, PUTATIVE-RELATED 1 285 - -
Cla06g00690 288 Pfam Family of unknown function (DUF716) 115 247 IPR006904 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00690 - - - bhj:120067159 510.375
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01314 Cla-Chr5:16050208 Cla06g00690 Cla-Chr6:8826022 4.37E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g769 . Blo12g00138 Bda03g01093 . Bpe04g00986 . Bma04g01018 . Cmo08g01035 Cmo17g00146 . . . . . . . . . . . . . . Cla06g00690 Cam06g0741 Cec06g0748 Cco06g0759 Clacu06g0732 Cmu06g0716 Cre06g1491 . Cone15ag0181 . . . Csa02g01036 Chy05g00298 . . . . . . . . . Sed06g0389 . . Cma08g01065 Cma17g00147 Car08g00941 Car17g00129 . Cpe17g00211 Bhi12g01572 Tan06g2375 Cmetu05g0161 Lac12g2127 Hepe03g0307 . Lcy13g0403 . . . . . . . Lsi09g01202 . . Cme05g00606
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009747 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00690 Cla_Chr06 FPKM 12.310071 12.046839 7.907077 7.613836 33.481358 28.75864 31.820642 6.209723 5.886429 7.142771