Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00706 ATGACTCTGCCAGTTACTGAAGCCGAAGTCGCTTCGTCTTCCCAAATGAAGATCAACGATCAGCTCGCTCTCTCAGATTGTCGAGTCAAAGAAGTATCAGAGAAGCATATGAATTTCGCATCTCACTTGGTCTCTATATCACTTCCCATTCCTCTTCTATTTCAACTCGGGATCGTGAAGAAGAAAAAGCAGAAGACTGCTGCAGCTTCTAATTCAGGCGTAGATCTGAAGTCCATCATCCATAACCATGCATTGTTCTTTGACAAGTTAGTGGAGCTTATTCCGGTAAGGTTCTATTTACCTGGTGATGAAAAAGGAAAACCTTGGTTTCAGGGCCTCAGCAAGAATGAAAAGGCTATGGCTAAGAAGGAATCAAAGGAAAACCTTAAGAAAGTACGAAGAGATCGTATGGATCCAGAAAAGTCGTCTAAATCAACAGTTGATTTGCTTAAAGAAAGCTTGGAAAATGAAAAGCTGAAAAATGGAAGTCACGATGATGAAGAGGATGTTAAGCCAGTGGTATCTGGGTTTAATGATGATGATCAGTCAGTGACATATGAAGAACTAAGACAACGCCTTCATCGAAAAATTGAAGAGTTCCGGGTGAACAGAAATACAGGATGTTCAAATAGGGAAAAAAAGAGAAATGACAGGAACGAGAGAAGGGAAGTTATCCAGAAGAAACGCAAGAGAGAAAGTGACCCTGACCAGAAAAAATCAGTCACCAACCCCTCCAAAGTCGAAATGGAGAGGAATGTTGTTGAGGCCTCCAAAGAGCTTGCGTTTGGTCATGTTAAACTAGGAACTGAAGAAGAGCATGGTAAGAATAAGAAGAGAAAACTCTCCAAGTTGAAGGAACTTGAAAAGGCAAAAAAGTTGGAGGAAGCAAAGAAAGATCCCGAAAAGGGCGAGATCATATTGAAGAAGCATTCTTGGAACGCAGCTACAAGTAGAGCTGCTGGGGTTAAAGTTCATGATGATCCACAGCGTCTGATGAAGAGTTTACGGAAGGAAAAGAAACAGCAACTTAAGAATGTTGAGAAATGGAAAGACAGGATTGAAACCACCCAGAAGATGAAAGCAGAAAGACAACAAAAGAGATCAGAAAACATAGCTCAGAAAATCCATGACAAGAAGATGAAACGGATTGCAAAGAGGGAGAAGAAACTAATGCGCCCTGGGTTCGAAGGTCGCAAGGAAGGTTTCATTAACGAAAGCACCGGATGA 1227 41.48 MTLPVTEAEVASSSQMKINDQLALSDCRVKEVSEKHMNFASHLVSISLPIPLLFQLGIVKKKKQKTAAASNSGVDLKSIIHNHALFFDKLVELIPVRFYLPGDEKGKPWFQGLSKNEKAMAKKESKENLKKVRRDRMDPEKSSKSTVDLLKESLENEKLKNGSHDDEEDVKPVVSGFNDDDQSVTYEELRQRLHRKIEEFRVNRNTGCSNREKKRNDRNERREVIQKKRKRESDPDQKKSVTNPSKVEMERNVVEASKELAFGHVKLGTEEEHGKNKKRKLSKLKELEKAKKLEEAKKDPEKGEIILKKHSWNAATSRAAGVKVHDDPQRLMKSLRKEKKQQLKNVEKWKDRIETTQKMKAERQQKRSENIAQKIHDKKMKRIAKREKKLMRPGFEGRKEGFINESTG 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8939887 8942393 - ClCG06G007330.2 Cla06g00706 274898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00706 408 Pfam Surfeit locus protein 6 211 382 IPR029190 -
Cla06g00706 408 Coils Coil 332 359 - -
Cla06g00706 408 MobiDBLite consensus disorder prediction 207 250 - -
Cla06g00706 408 PANTHER SURFEIT LOCUS PROTEIN 6 44 406 IPR007019 -
Cla06g00706 408 MobiDBLite consensus disorder prediction 357 377 - -
Cla06g00706 408 MobiDBLite consensus disorder prediction 120 182 - -
Cla06g00706 408 Coils Coil 277 297 - -
Cla06g00706 408 PANTHER BNAC02G02430D PROTEIN 44 406 - -
Cla06g00706 408 MobiDBLite consensus disorder prediction 357 408 - -
Cla06g00706 408 MobiDBLite consensus disorder prediction 120 175 - -
Cla06g00706 408 Pfam 60S ribosome biogenesis protein Rrp14 80 140 IPR029188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00706 - - - csv:101209715 563.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00706 Cla-Chr6:8939887 Cla06g01755 Cla-Chr6:31076661 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g802 Blo01g00305 . . Bda08g00009 Bpe04g00978 . Bma04g01025 Bma05g01260 . Cmo17g00131 . . . . . . . . . . . . . . Cla06g00706 Cam06g0756 Cec06g0762 Cco06g0774 Clacu06g0747 Cmu06g0730 Cre06g1507 Cone14ag0191 Cone15ag0201 . . . Csa02g01018 Chy05g00282 . . . . . Bpe05g01114 . . . . . . . Cma17g00129 . Car17g00115 Cpe12g00113 . . . . . . . . . . . . . . . Lsi09g01186 . . Cme05g00627
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002685 1 3 0 3 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1 2 2 1 1 2 2 2 2 1 7 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00706 Cla_Chr06 FPKM 21.08218 22.924482 24.318514 28.44672 9.732486 9.417247 10.351411 33.303318 33.113895 33.213547