Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00708 ATGGGTGCAGAACCAGTGCAGTCTATGTCTTCTCAAAACAAAAGGCTAAAGAGGAAGAAAACCCATAAAGACCCAGAATTGGAACGTCTCGACTCACTCCCGTGGAACTCATCAATTCCTAATGATGACACTTTATCTGCATTCATTGGTTCCAATGATCTGGAAGGAGGTTTTCTTTCGCTTGAGGAGATTGATGAAGCTGAGTATGGCTTGGTAATTCCCGAACCTGATACAATGAAACACAAGTTGATTCCAAAGGCCAGTGGAAATTCAAGGAAGGGTGAGCAAAACAATGCTGATAACTGTGGGGATGCATCGCGAGATAGTGGTGATAGTATTAATAAGGAAGTGGCTGGGCACAATGTGAATATGAGAACTAGCCAAAAAGGGAAAAAGGAGAAGAAGAAAAAGAAGAAAAAGAAGAAGGTCATTCATGAAGTCCCAACTGCTGAGGAAGTTGTGGCTGAAGATATAGGTGGCAGTGATAATGATGGGATTGAGACAGAGATTGGAAATGAAATGGATGATGGCGATCCTTTGGAGACCGGGAAGAAGCGACAAAAGAAAGAAAAAGAAACAAAGAACCATGGAATTGAGAAAGAAATCAGGGATGACGTTGAAAAGGATGCAGTTGATGAAACTGAATATTATGCATGGAATGAGTTGAGACTCCATCCTTTGCTTATGAAATCGATCTACAAACTTGGGTTTAAGGAACCTACAGCAATCCAGAAAGCTTGTATTCCAGCTGCTGCTTACCAGGGGAAGGATGTTGTTGGTGCTGCTGAGACAGGATCTGGAAAAACACTAGCTTTTGGATTGCCAATCCTACAACGTTTCTTGGATGAACGAGAGAAATCTGGAAAGATGTCTGAAGAAAAAGGAGTAGATGCAAAAAGATATGCTCCCAGAAGTCTTCTACGGGCTCTAATTATTACTCCTACTAGAGAACTTGCTCTTCAGGTTACTGATCATCTCAAGGCAGTCGCAGTAGGTACAGATATCAGGGTGGTTCCAATCGTTGGTGGGATGTCCACTGAAAAGCAGGAAAGGCTTTTAAGGATGAGGCCAGAGGTTGTAGTTGGAACTCCAGGACGGTTGTGGGAACTTATGTCAGGAGGAGAGAAGCATCTTGTTGAGTTGCAGACATTGTCTTTCTTTGTGCTGGATGAGGCTGATAGGATGATAGAAAATGGCCACTTTCGTGAGTTGCAGTCCATAATTGATATGCTTCCTGTGACCCATGGTTCTGCAGAAAATTTACAAAATGCAGAAAACTCTTTGACCTCTGCAAGTTCTCAAAGAAAGAAAAGACAAACACTTGTGTTTTCTGCTACATTGTCACTATCTTCTGATTTCCGTAAGAAACTAAAGCGTGGATCATCAAGACCTAATCAATTGGGGATGGATGGTTTGAATTCTATAGAGGCTCTATCTGAGAGAGCTGGGATAAGACCTAATGTTGCTATTATAAATCTGACAAACACGTCGGTCTTGGCAAATAATCTTGAAGAATCATTTATAGAATGCAGGGAAGAAGACAAAGATGCTTATTTGTATTACGTTCTATCTGTTTATGGACAAGGCCGCACTATTGTGTTCTGTACATCCATTGCTGCATTACGGCATATTGCTGCTTTATTATCCATTGTTGGTGTTAATGTCTTGACTCTTCATGCTCAAAGGCAGCAACGAGCACGCTTGAAGGCAATTGATCGTTTCCGTGGAAGTCAAAATGGGATACTGATTGCCACTGATGTTGCGGCTAGAGGCCTTGATATTCCTGGTGTTCGAACTGTTGTCCACTATCAACTACCACATTCGGCTGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCTTCTGCTGATGGATGCAGTATTGCGTTGGTCTCAGCCAATGAAACTTCCAAATTTGCATCTCTATGCAAATCATTCTCTAAGGAAAGCTTCCAGCGATTTCCTGTTGATAATTCATACATGCCAGAGGTTCTAAAACGTTTGTCTCTTGCACGCCAGATTGACAAGATTCTGCGGAAGCATTCCCAGGAGAAGGCAAGTAAAACCTGGTTTGAGCGGAATGCGGAGTTGGTGGAATTAGTTGTGGACAACGATGACAGTGAAGAGGAGAGAGTAAACAATTATAAGCAGAAGAAATCTGGCTCCATTCAGTTAAAGAAATTGCAGCAGGAGCTCGACATGCTGCTTTCCCACCCTCTGCAACCAAAATCATTTTCACATCGATATTTGGCTGGTGCTGGGGTGTCACCTCTTCTGCAACATCAATTTGAAGAACTGGCCAAGCAGAATAATGCATCTGTTCAGAATATGGGAGATAACAAAAGGAGGAAGTTGGCTGCTTTTGGTCAAGATCTTACAGAACCACTTCAAGCACTTCGAACTGGTGGTCAACAGGTACATATGGATGCAAAAGAGATGGCTGAGAAACGGAGGAAAATGGAGAACCTTAGGAGAAAGAGAAAAGAGGAGAAAAAACGCTTGCGTGATCAGCGGAGAAATAAACGGAAACAAATGAAAGGCAAGATTTAG 2553 42.34 MGAEPVQSMSSQNKRLKRKKTHKDPELERLDSLPWNSSIPNDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKGEQNNADNCGDASRDSGDSINKEVAGHNVNMRTSQKGKKEKKKKKKKKKVIHEVPTAEEVVAEDIGGSDNDGIETEIGNEMDDGDPLETGKKRQKKEKETKNHGIEKEIRDDVEKDAVDETEYYAWNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVVGAAETGSGKTLAFGLPILQRFLDEREKSGKMSEEKGVDAKRYAPRSLLRALIITPTRELALQVTDHLKAVAVGTDIRVVPIVGGMSTEKQERLLRMRPEVVVGTPGRLWELMSGGEKHLVELQTLSFFVLDEADRMIENGHFRELQSIIDMLPVTHGSAENLQNAENSLTSASSQRKKRQTLVFSATLSLSSDFRKKLKRGSSRPNQLGMDGLNSIEALSERAGIRPNVAIINLTNTSVLANNLEESFIECREEDKDAYLYYVLSVYGQGRTIVFCTSIAALRHIAALLSIVGVNVLTLHAQRQQRARLKAIDRFRGSQNGILIATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASADGCSIALVSANETSKFASLCKSFSKESFQRFPVDNSYMPEVLKRLSLARQIDKILRKHSQEKASKTWFERNAELVELVVDNDDSEEERVNNYKQKKSGSIQLKKLQQELDMLLSHPLQPKSFSHRYLAGAGVSPLLQHQFEELAKQNNASVQNMGDNKRRKLAAFGQDLTEPLQALRTGGQQVHMDAKEMAEKRRKMENLRRKRKEEKKRLRDQRRNKRKQMKGKI 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8967896 8987258 - ClCG06G007350.2 Cla06g00708 274900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00708 850 MobiDBLite consensus disorder prediction 129 143 - -
Cla06g00708 850 MobiDBLite consensus disorder prediction 821 850 - -
Cla06g00708 850 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 112 771 - -
Cla06g00708 850 MobiDBLite consensus disorder prediction 177 196 - -
Cla06g00708 850 CDD SF2_C_DEAD 503 632 - -
Cla06g00708 850 MobiDBLite consensus disorder prediction 810 850 - -
Cla06g00708 850 MobiDBLite consensus disorder prediction 1 43 - -
Cla06g00708 850 MobiDBLite consensus disorder prediction 82 196 - -
Cla06g00708 850 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 502 670 IPR001650 -
Cla06g00708 850 PANTHER RNA HELICASE 112 771 - -
Cla06g00708 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 638 IPR027417 -
Cla06g00708 850 SMART helicmild6 542 623 IPR001650 -
Cla06g00708 850 MobiDBLite consensus disorder prediction 90 108 - -
Cla06g00708 850 Pfam DEAD/DEAH box helicase 241 448 IPR011545 GO:0003676|GO:0005524
Cla06g00708 850 Gene3D - 180 467 IPR027417 -
Cla06g00708 850 CDD DEADc_DDX24 228 491 - -
Cla06g00708 850 SMART ultradead3 236 478 IPR014001 -
Cla06g00708 850 Gene3D - 492 736 IPR027417 -
Cla06g00708 850 Coils Coil 807 845 - -
Cla06g00708 850 Pfam Helicase conserved C-terminal domain 514 622 IPR001650 -
Cla06g00708 850 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 388 396 IPR000629 -
Cla06g00708 850 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 249 465 IPR014001 -
Cla06g00708 850 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 217 245 IPR014014 GO:0003724
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00708 K14805 DDX24, MAK5; ATP-dependent RNA helicase DDX24/MAK5 [EC:3.6.4.13] - csv:101209958 1476.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00708 Cla-Chr6:8967896 Cla09g00986 Cla-Chr9:10347357 1.04E-58 dispersed
Cla06g00708 Cla-Chr6:8967896 Cla02g02318 Cla-Chr2:38276790 8.43E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g808 Blo01g00306 . . Bda08g00011 . . . Bma05g01262 Cmo08g01023 . . . . . . . . . . . . . . . Cla06g00708 Cam06g0758 Cec06g0764 Cco06g0776 Clacu06g0749 Cmu06g0732 Cre06g1509 . . . . . Csa02g01016 Chy05g00280 . . . . . Bpe05g01117 . . . . . . Cma08g01052 . Car08g00929 . . Cpe17g00224 . . . . . . . . . . . . . . Lsi09g01183 . . Cme05g00630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011338 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00708 Cla_Chr06 FPKM 10.097585 9.15355 0.77116 0.949946 50.277897 54.910503 52.783051 0.721869 0.87685 0.831847