Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00710 ATGAGCACAGCCTTCTTCTCCACACTATTAAACCCATTCACTCTCCGCATTTCGTCGCCTTTCCCTTCTCTTCTCACTGCTCTTCTTCTTCCTCTCGCTGCTCCCATCTCCTACCTTTTTGGGTTTCAGCGGACGTCTACAATGCACCGGTTCGCCACAGGCCTCGCTTCCAAAGCCCGCCTTGCTAGGAACAGTACCAATCAGATTGCTAGTAGGTCTAGCTGGAGCAGAAACTATGCCGCCAAAGATGTTAAATTTGGGGTGGAGGCTCGAGGTCTTATGCTCAAGGGTGTTGAAGATCTTGCTGATGCTGTTAAAGTCACAATGGGTCCGAAGGGGCGCAATGTAGTGATTGAACAAAGTTATGGGGCTCCCAAAGTTACAAAAGATGGTGTAACTGTTGCAAAGAGTATCGAGTTTAAAGATAAAGTTAAAAATGTTGGTGCCAGTCTTGTGAAGCAGGTTGCTAATGCGACCAATGATGTGGCAGGCGATGGGACCACTTGTGCTACTATTCTTACAAGAGCAATATTTACGGAGGGTTGCAAGTCCGTTGCTGCTGGAATGAATGCCATGGATTTAAGACGTGGCATCTCCATGGCAGTCGATTCTGTAGTAACAAACTTGAAGAGTAGAGCACGAATGATAAGCACATCTGAAGAGATAGCTCAGGTCGGGACAATATCTGCAAATGGAGAAAGGGAGATTGGTGAGTTAATTGCCAAGGCCATGGAGAAAGTTGGCAAAGAGGGCGTGATCACCATCGCGGATGGGAAAACATTGTATAATGAGTTGGAAGTTGTTGAAGGGATGAAGTTAGACAGGGGATATATTTCCCCTTACTTCATTACAAACCAAAAGAATCAGAAATGTGAATTGGAGGATCCTCTTATTCTAATCCATGAAAAGAAAATCTCAAGCATAAATGCTGTGGTGAAAGTTCTAGAGTTGGCTCTGAAGAGGCAAAGGCCCCTTCTTATTATTTCCGAAGATGTTGAAAGTGATGCACTAGCCACTCTTATCCTGAATAAGCTCCGCGCTGGAATCAAGGTCTGTGCCATTAAAGCACCAGGTTTTGGGGAAAATAGGAAGGCTGGACTGCAGGACCTTGCAGTTCTCACGGGTGGTGAAGTCATTACTGAAGAGCTTGGAATGAATCTTGAGAAAGTTGATCTGGATATGCTTGGCTCTTGCAAGAAGATCACAATTTCAAAGGATGATACAGTTATTCTTGATGGTGCCGGTGACAAGAAAGCTATTGAGGAAAGGTGTGAACAGATAAGGGCTGGTATTGAAGCAAGCACTTCAGATTATGACAAGGAGAAGTTACAGGAGAGATTAGCGAAACTCTCTGGGGGTGTTGCTGTTTTAAAGATTGGAGGAGCAAGTGAGGCAGAAGTGGGCGAGAAGAAGGATAGAGTCACCGATGCCTTGAATGCCACAAAAGCAGCTGTTGAAGAAGGAATAGTACCAGGTGGTGGTGTTGCTCTTTTGTATGCATCCAAAGAACTAGAAAAACTTCCAACGGCCAACTTCGATCAGAAGATTGGTGTCCAGATTATTCAGAATGCTCTAAAGACACCCGTACACACAATTGCATCGAATGCTGGAGTTGAGGGAGCCGTTGTGGTTGGGAAGCTCTTGGAGCAGGACAATCCTGATCTTGGTTATGATGCTGCAAAAGGTGAATATGTAGACATGGTCAAAGCTGGCATCATCGATCCTCTGAAAGTAATTAGAACTGCACTCGTGGACGCCGCCAGTGTTTCCTCTTTGATGACGACAACAGAAGCCATCGTTGTCGAACTCCCCAAGGACGAAAAGGAAGTTCCAGCAATGGGTGGTGGCATGGGCGGAATGGATTACTAA 1869 45.53 MSTAFFSTLLNPFTLRISSPFPSLLTALLLPLAAPISYLFGFQRTSTMHRFATGLASKARLARNSTNQIASRSSWSRNYAAKDVKFGVEARGLMLKGVEDLADAVKVTMGPKGRNVVIEQSYGAPKVTKDGVTVAKSIEFKDKVKNVGASLVKQVANATNDVAGDGTTCATILTRAIFTEGCKSVAAGMNAMDLRRGISMAVDSVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILIHEKKISSINAVVKVLELALKRQRPLLIISEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKAGLQDLAVLTGGEVITEELGMNLEKVDLDMLGSCKKITISKDDTVILDGAGDKKAIEERCEQIRAGIEASTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELEKLPTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKDEKEVPAMGGGMGGMDY 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9023258 9028050 - ClCG06G007380.1 Cla06g00710 274902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00710 622 Gene3D - 84 601 IPR027413 -
Cla06g00710 622 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 62 615 - -
Cla06g00710 622 TIGRFAM GroEL: chaperonin GroL 81 605 IPR001844 GO:0042026|GO:0140662
Cla06g00710 622 Hamap Chaperonin GroEL [groEL]. 80 620 IPR001844 GO:0042026|GO:0140662
Cla06g00710 622 PRINTS 60kDa chaperonin signature 161 188 IPR001844 GO:0042026|GO:0140662
Cla06g00710 622 PRINTS 60kDa chaperonin signature 476 497 IPR001844 GO:0042026|GO:0140662
Cla06g00710 622 PRINTS 60kDa chaperonin signature 105 131 IPR001844 GO:0042026|GO:0140662
Cla06g00710 622 PRINTS 60kDa chaperonin signature 346 369 IPR001844 GO:0042026|GO:0140662
Cla06g00710 622 PRINTS 60kDa chaperonin signature 428 453 IPR001844 GO:0042026|GO:0140662
Cla06g00710 622 SUPERFAMILY GroEL equatorial domain-like 85 600 IPR027413 -
Cla06g00710 622 SUPERFAMILY GroEL-intermediate domain like 216 283 IPR027410 -
Cla06g00710 622 SUPERFAMILY GroEL apical domain-like 263 454 IPR027409 -
Cla06g00710 622 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 62 615 - -
Cla06g00710 622 Gene3D - 215 488 IPR027410 -
Cla06g00710 622 CDD GroEL 82 602 IPR001844 GO:0042026|GO:0140662
Cla06g00710 622 Pfam TCP-1/cpn60 chaperonin family 101 602 IPR002423 GO:0005524
Cla06g00710 622 ProSitePatterns Chaperonins cpn60 signature. 483 494 IPR018370 GO:0005524|GO:0006457
Cla06g00710 622 Gene3D GroEL 270 451 IPR027409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00710 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - csv:101210207 1085.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00710 Cla-Chr6:9023258 Cla09g00880 Cla-Chr9:8994778 0 dispersed
Cla06g00710 Cla-Chr6:9023258 Cla09g00063 Cla-Chr9:611136 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g828 Blo01g00313 Blo12g00132 Bda03g01108 . Bpe04g01053 . Bma04g01034 Bma05g01268 . . . . . . . . . . . . . . . . Cla06g00710 Cam06g0764 Cec06g0768 Cco06g0779 Clacu06g0752 Cmu06g0735 Cre06g1515 Cone14ag0201 Cone15ag0219 . Cone4ag0377 . . . . . . . . Bpe05g01123 . . . . . . . . . . . Cpe17g00226 Bhi12g01535 . . Lac12g2109 . . . . . . . . . . . . . Cme05g00632
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000827 3 3 3 3 3 3 4 3 3 2 3 3 4 2 3 4 3 5 4 3 3 2 3 3 3 2 3 4 2 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00710 Cla_Chr06 FPKM 0.331337 0.299545 0.920132 0.680331 0.181117 0.0 0.0 0.0 0.0 0.0