Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00721 ATGGCGGCTACAGATTGCTCCCTGACTCTAGCTCAGCTCCTCGGCCCCAATGTCACCAACTCCGGCGCCGCCGCCTCCTTCATTTGCGACCAATTCTCCACCTCCACCAACAACTTTTCCGACACCAAATTCGCCGTCGACACCGTTTACCTCCTCTTCTCCGCCTACCTCGTCTTCTCCATGCAGCTCGGCTTCGCCATGCTCTGTGCCGGCTCCGTCCGCGCCAAAAACACCATGAACATCATGCTCACCAATGTCCTCGACGCTGCTGCCGGCGGCCTTTTCTACTACCTCTTCGGCTTCGCCTTCGCCTTCGGCACCCCTTCCAACCCCTTCATCGGCCGCCATTTCTTTGGCCTCAAGTCAATCCCTTCCACCGCCGCCGATTACAGCTTCTTTCTCTATCAATGGGCTTTCGCCATCGCTGCCGCCGGTATCACCAGCGGCTCAATTGCCGAGCGAACCCAATTTGTTGCCTATTTGATCTACTCCTCCGTTTTGACCGGTTTCGTTTACCCGGTCGTGTCCCATTGGTTCTGGTCTCCAGACGGTTGGGCCAGCCCGTCACGGTCCAACGGTGACCTCTTGTTTGGAACTGGAGTCATAGATTTCGCCGGTTCCGGCGTGGTTCACATGGTCGGTGGAATCGCTGGACTTTGGGGAGCTTTAATAGAAGGACCACGAATCGGCCGGTTCGACAGAAGCGGCAGATCCGTTGCTCTACGAGGCCATAGCGCTACGTTAGTTGTTCTCGGTACCTTCATGCTTTGGTTCGGTTGGTACGGGTTCAACCCCGGTTCCTTCACTAAAATCTTAGTTCCGTATGGTTCGAATAATTACTACGGACAGTGGAGTGCCGTCGGTCGAACCGCCGTGACGACGACACTTGCCGGTTGCACGGCTGCGCTAACAACGCTTTTCGGAAAACGAATTCTATCCGGCCACTGGAACGTTACCGACGTCTGCAATGGCTTACTTGGCGGCTTTGCCGCCATAACCTCTGGCTGCTCGGTGGTGGAGCCGTGGGCCGCTGTGATATGTGGGTTTGTGGCGGCGGTGGTTTTAATCAGCTGTAACAAACTGGCAGAGAAGGTGAAATTTGACGACCCATTGGAGGCGGCACAACTGCACGGCGGTTGCGGGGCGTGGGGGATAATTTTCACGGCGTTGTTCGCGACGAAGAAGTATGTGAACGAGGTGTACGGCGGAGATATGGGACGGCCACACGGGCTGTTTATGGGCGGCGGAGGGAAGTTGTTGGGTGCGCATTTGATACAAATTTTGGTGATTGTTGGGTGGGTTAGCGTTACAATGGGGCCGTTGTTTTTTGGGCTACATAAGCTGAAGCTATTAAGAATCTCGCCGGAGGATGAGATGGCCGGAATGGACATGACCAGACACGGTGGATTTGCTTACGTCTACCATGATGAAGATGAATCTCCGACCAATGGAGTTCAAATGAGTAAGATTAAGCCAAGAGAAACAAGTCCAATTGGAAATTAA 1503 54.36 MAATDCSLTLAQLLGPNVTNSGAAASFICDQFSTSTNNFSDTKFAVDTVYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNPFIGRHFFGLKSIPSTAADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWASPSRSNGDLLFGTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSATLVVLGTFMLWFGWYGFNPGSFTKILVPYGSNNYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAVICGFVAAVVLISCNKLAEKVKFDDPLEAAQLHGGCGAWGIIFTALFATKKYVNEVYGGDMGRPHGLFMGGGGKLLGAHLIQILVIVGWVSVTMGPLFFGLHKLKLLRISPEDEMAGMDMTRHGGFAYVYHDEDESPTNGVQMSKIKPRETSPIGN 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9209585 9211087 - ClCG06G007505.1 Cla06g00721 274913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00721 500 MobiDBLite consensus disorder prediction 478 500 - -
Cla06g00721 500 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cla06g00721 500 Gene3D Ammonium transporter AmtB like domains 26 491 IPR029020 -
Cla06g00721 500 TIGRFAM amt: ammonium transporter 47 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cla06g00721 500 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cla06g00721 500 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 1 5 495 - -
Cla06g00721 500 SUPERFAMILY Ammonium transporter 46 453 - -
Cla06g00721 500 PANTHER AMMONIUM TRANSPORTER 5 495 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00396 Cla-Chr5:3596803 Cla06g00721 Cla-Chr6:9209585 0 dispersed
Cla06g00721 Cla-Chr6:9209585 Cla07g01480 Cla-Chr7:32066972 2.87E-17 dispersed
Cla08g01306 Cla-Chr8:25962297 Cla06g00721 Cla-Chr6:9209585 1.20E-27 transposed
Cla10g02113 Cla-Chr10:36819904 Cla06g00721 Cla-Chr6:9209585 2.20E-22 transposed
Cla11g00998 Cla-Chr11:19217089 Cla06g00721 Cla-Chr6:9209585 0 transposed
Cla01g02014 Cla-Chr1:34754990 Cla06g00721 Cla-Chr6:9209585 1.11E-17 transposed
Cla06g00721 Cla-Chr6:9209585 Cla07g00136 Cla-Chr7:1555244 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00721 K03320 - csv:101212168 950.273