Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00739 ATGGCGGCACTTAGTAAATGGCATTCTCTCTCTCTGTTTGCCCTTGCATTGGTGTTCTTCGTAACAATCGCTCTCGTTCTCAAAGAAGAGACCTCTGAAATTCGGACTGTGTTAGCGACGGAGTTTCAGAGCTCTAGCAACTCATCAATGGCGATTAGGCTGGAAAGTGATGATATGGAGCAAGAATTCAACAATGAACATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATTATGGCATTTTCTTGTAGCCGTTGGGATGAAAAATTCGCACTACTAGACTCCCCTGTCATTAGGAGTATCCGTAATAGCACTGAAAGGAGGAAGTTGGGATTCTTCTCCTGTGGAACAGGCAATCCCATTGATGACTGCTGGCGTTGTGACTCCAATTGGCACCGCAACCGGAAGCGCCTTGCGGAATGTGGCATTGGGTTTGGTCGGAATGCTATTGGTGGACGTGATGGTCGTTTCTATGTCGTAACTGATTCGAGTGACAACGATCCAGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGGGACATGGTGATTCAATTGAAACAGGAGCTCATCATGAACAGTTTTAAGACAATTGATGCTCGAGGGGTAAATGTACATATTGCCAATGGCGCTTGCATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGAAATGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGGTCTAGTCATATATGGATTGATCACAATTCACTCTCTAATTGTGCTGATGGACTTGTTGATGCTGTCATGGGCTCAACTGCAATCACAATCTCCAACAATCACTTCACTCACCACAATGAGGTGATGCTTCTGGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGGCTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTATACTCACTGGGAGATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGCAACAGATATGCTGCACCAACCAACCCTTTTGCCAAAGAGGTGACGAAGCGAGTCGAAACACCAGAGAGCGAATGGAAGGGGTGGAATTGGAGATCAGAAGGAGATATGTTGTTGAATGGTGCTTATTTCACTCCATCAGGTGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCCAGCTTAGGAGCCAAATCTGCTTCCATGGTTGGCTCCATTACTTCTTCTGCAGGTTCGCTCCCTTGCCGCCGAGGCCATCCCTGCTAA 1413 46.57 MAALSKWHSLSLFALALVFFVTIALVLKEETSEIRTVLATEFQSSSNSSMAIRLESDDMEQEFNNEHAVDNPDEIAASVEIMAFSCSRWDEKFALLDSPVIRSIRNSTERRKLGFFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETPESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9598542 9601854 - ClCG06G007620.1 Cla06g00739 274931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00739 470 PANTHER PECTATE LYASE 18-RELATED 102 467 IPR045032 GO:0030570
Cla06g00739 470 SMART amb_all 196 393 IPR002022 -
Cla06g00739 470 SUPERFAMILY Pectin lyase-like 103 464 IPR011050 -
Cla06g00739 470 Gene3D - 121 463 IPR012334 -
Cla06g00739 470 Pfam Pectate lyase 208 385 IPR002022 -
Cla06g00739 470 PRINTS Pollen allergen Amb family signature 268 289 IPR018082 -
Cla06g00739 470 PRINTS Pollen allergen Amb family signature 168 193 IPR018082 -
Cla06g00739 470 PRINTS Pollen allergen Amb family signature 412 436 IPR018082 -
Cla06g00739 470 PRINTS Pollen allergen Amb family signature 441 464 IPR018082 -
Cla06g00739 470 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Cla06g00739 470 PRINTS Pollen allergen Amb family signature 204 220 IPR018082 -
Cla06g00739 470 PRINTS Pollen allergen Amb family signature 144 161 IPR018082 -
Cla06g00739 470 PRINTS Pollen allergen Amb family signature 370 389 IPR018082 -
Cla06g00739 470 PANTHER PECTATE LYASE 102 467 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00372 Cla06g00739 CCT
Cla05g00372 Cla06g00739 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02174 Cla-Chr5:33325321 Cla06g00739 Cla-Chr6:9598542 0 dispersed
Cla06g00739 Cla-Chr6:9598542 Cla09g01903 Cla-Chr9:36705078 0 dispersed
Cla10g01416 Cla-Chr10:29217784 Cla06g00739 Cla-Chr6:9598542 1.57E-164 dispersed
Cla05g00372 Cla-Chr5:3399550 Cla06g00739 Cla-Chr6:9598542 0 wgd
Cla06g00739 Cla-Chr6:9598542 Cla07g00163 Cla-Chr7:1854874 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00739 K01728 - csv:101217580 855.899