Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00745 ATGCTCTTGTTTACTGAGGGCACTCTAATGTCTGCTGAATCTGCACATTCCATTGATGTTAAAAATCTGTTGCCAGCCATCATACTTATGGTTTACAATGTAACCGAGTTCTTGGAAGACCATCCCGGTGGCGACGAGGTGTTGTTGTCTGGCACAGGTAAGGATGCAACTGATGATTTTGAAGATGTGGGTCATAGTGAGAGTGCAAGAGAAATGATGAGCAAATACTACATTGGAGAGATGGACGTGTCGACGATCGCAGGACGGTCGGCATACACAACTCCAAAGCAGCCTCATTACAATGAGGATAAGACGACCGAGTTCATCATCAAGCTCCTCCAGTTCTTGGTTCCTCTCGCAATCTTGGGTTTGGCAGTGGGTATCCGCTTTTACACCAAATCAACCTGA 408 46.08 MLLFTEGTLMSAESAHSIDVKNLLPAIILMVYNVTEFLEDHPGGDEVLLSGTGKDATDDFEDVGHSESAREMMSKYYIGEMDVSTIAGRSAYTTPKQPHYNEDKTTEFIIKLLQFLVPLAILGLAVGIRFYTKST 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9907715 9909179 - ClCG06G007700.2 Cla06g00745 274937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00745 135 SMART Cyt_b5_2 10 82 IPR001199 -
Cla06g00745 135 PRINTS Cytochrome B5 signature 69 81 IPR001199 -
Cla06g00745 135 PRINTS Cytochrome B5 signature 31 41 IPR001199 -
Cla06g00745 135 PRINTS Cytochrome B5 signature 41 55 IPR001199 -
Cla06g00745 135 PRINTS Cytochrome B5 signature 56 63 IPR001199 -
Cla06g00745 135 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 37 44 IPR018506 GO:0020037
Cla06g00745 135 Gene3D - 9 85 IPR036400 -
Cla06g00745 135 PANTHER CYTOCHROME B5 26 133 - -
Cla06g00745 135 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 30 85 IPR036400 -
Cla06g00745 135 Pfam Cytochrome b5-like Heme/Steroid binding domain 27 81 IPR001199 -
Cla06g00745 135 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 14 82 IPR001199 -
Cla06g00745 135 PANTHER BNAC04G43300D PROTEIN 26 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00745 K23490 CYB5; cytochrome b5 - csv:101213506 192.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00260 Cla-Chr6:3283674 Cla06g00745 Cla-Chr6:9907715 1.43E-23 dispersed
Cla06g00745 Cla-Chr6:9907715 Cla08g01049 Cla-Chr8:23164007 1.30E-20 dispersed
Cla05g00353 Cla-Chr5:3195017 Cla06g00745 Cla-Chr6:9907715 5.03E-60 wgd
Cla06g00745 Cla-Chr6:9907715 Cla07g00186 Cla-Chr7:2078753 5.64E-45 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g00023 . 1 134 NADPH P450 reductases AT5G53560 79.1 3.4e-59 224.6
Cla05g00353 . 106 238 NADPH P450 reductases AT5G53560 68.4 1.5e-51 199.1
Cla06g00745 . 31 134 NADPH P450 reductases AT5G53560 67.3 4.8e-37 151.0
Cla05g00353 . 106 237 NADPH P450 reductases AT5G48810 64.9 8.2e-48 186.8
Cla01g00023 . 1 134 NADPH P450 reductases AT5G48810 59.6 6.5e-45 177.2
Cla05g00353 . 127 238 NADPH P450 reductases AT2G32720 84.8 7.6e-51 196.8
Cla06g00745 . 3 134 NADPH P450 reductases AT2G32720 69.2 4.3e-46 181.0
Cla01g00023 . 22 133 NADPH P450 reductases AT2G32720 67.0 2.1e-40 162.2
Cla10g01589 . 2 280 NADPH P450 reductases AT5G17770 78.1 7.9e-127 450.3
Cla02g02350 . 55 327 NADPH P450 reductases AT5G17770 73.3 3.7e-116 414.8
Cla04g00515 . 2 372 NADPH P450 reductases AT5G17770 59.6 8.8e-110 393.7
Cla01g00023 . 1 134 NADPH P450 reductases AT5G53560 79.1 3.4e-59 224.6
Cla05g00353 . 106 238 NADPH P450 reductases AT5G53560 68.4 1.5e-51 199.1
Cla06g00745 . 31 134 NADPH P450 reductases AT5G53560 67.3 4.8e-37 151.0
Cla05g00353 . 106 237 NADPH P450 reductases AT5G48810 64.9 8.2e-48 186.8
Cla01g00023 . 1 134 NADPH P450 reductases AT5G48810 59.6 6.5e-45 177.2
Cla05g00353 . 127 238 NADPH P450 reductases AT2G32720 84.8 7.6e-51 196.8
Cla06g00745 . 3 134 NADPH P450 reductases AT2G32720 69.2 4.3e-46 181.0
Cla01g00023 . 22 133 NADPH P450 reductases AT2G32720 67.0 2.1e-40 162.2
Cla10g01589 . 2 280 NADPH P450 reductases AT5G17770 78.1 7.9e-127 450.3
Cla02g02350 . 55 327 NADPH P450 reductases AT5G17770 73.3 3.7e-116 414.8
Cla04g00515 . 2 372 NADPH P450 reductases AT5G17770 59.6 8.8e-110 393.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00745 Cla_Chr06 FPKM 5.989931 6.798946 7.686287 6.908177 13.098533 13.034052 15.359279 9.34071 8.568979 10.097973