Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00750 ATGTGGATTGTTCGTGGGATTTTTGTGGGATTGATTTTGATGATGATAATATTTGTAAGAGGAAATGAAGGTCAATCTTATAAAAGAGTAGGAGTGAAGAAATTGGCATGGAAGACTGTGGTTGTTGACCAGAATGGCCATGGAAATTTCTCTACCATTCAAGCTGCCATTGATTCTGTTCCTTCTAATAATAGGTTTTGGATCTCCATTCATGTTAACCCTGGTGTTTATAGAGAGAAGGTGAAAATCCCATATGATAAACCATATATCATTTTGAAAGGACAAAGAAAAAGAACAACAAAGGTTGTTTGGGACGACCATCTCACTGTTGCTCAGAGCCCTACTTTCACTTCTTCAGCTGATAATATTGTCGTCAAATCCATCACTTTTGTGAATTCTTACAACTATCCATGGAAGAATGGAAATCCAAGAGTTCCAGCAGTAGCAGCAATGATTACAGGCGACAAGTCGTCTTTCTATAGATGTGGTTTCTATGGAGTTCAGGACACATTATGGGATGATCAAGGACGACATTACTATCATCGTTGCACCATTCAAGGAGCTGTCGACTTTATTTTTGGAGCTGCCCAATCCATTTTTCAGGGGTGTTCAATATCAGTGGTTGGAGAAGCACTTCTTCCATTAGGGTCCACAAGCTTCATAACAGCACAGGGAAGAACCAACCCAAATGATGCAAATGGTTTTGTTTTCAAAGAATGCAAGGTGTTTGGGAGTGGCTCAGCCTTCTTAGGAAGGCCATGGAGAGGCTACTCAAGAGTTATCTTTTACAACTCCAACTTCTCCAACATTATAAACCCTTATGGTTGGGATCCTTGGCATTTTGTTGGTCAAGAGAACCAACTTACCTATGTAGAAAATGGGTGTTACGGACCAGGTGCTGACATGTCGCATCGAGTAAAATGGGAAAAGAAGCTCCATTTGAATGAAATACGACGACTCACTAGCATGAGTTTTATCGACACTCAAGCCATTTTGTACGATTTCCTAATTCTCCCTTTCCAGCCGTCAATCGCTGTTGAAGATTCATTGCACGCTTGTGATCTGATATGA 1071 40.52 MWIVRGIFVGLILMMIIFVRGNEGQSYKRVGVKKLAWKTVVVDQNGHGNFSTIQAAIDSVPSNNRFWISIHVNPGVYREKVKIPYDKPYIILKGQRKRTTKVVWDDHLTVAQSPTFTSSADNIVVKSITFVNSYNYPWKNGNPRVPAVAAMITGDKSSFYRCGFYGVQDTLWDDQGRHYYHRCTIQGAVDFIFGAAQSIFQGCSISVVGEALLPLGSTSFITAQGRTNPNDANGFVFKECKVFGSGSAFLGRPWRGYSRVIFYNSNFSNIINPYGWDPWHFVGQENQLTYVENGCYGPGADMSHRVKWEKKLHLNEIRRLTSMSFIDTQAILYDFLILPFQPSIAVEDSLHACDLI 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9993867 10000778 + ClCG06G007740.2 Cla06g00750 274942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00750 356 Pfam Pectinesterase 40 328 IPR000070 GO:0030599|GO:0042545
Cla06g00750 356 PANTHER PECTINESTERASE 10-RELATED 13 330 - -
Cla06g00750 356 Gene3D - 35 336 IPR012334 -
Cla06g00750 356 ProSitePatterns Pectinesterase signature 2. 185 194 IPR033131 -
Cla06g00750 356 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 13 330 - -
Cla06g00750 356 SUPERFAMILY Pectin lyase-like 38 328 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01467 Cla-Chr2:29207955 Cla06g00750 Cla-Chr6:9993867 4.92E-98 dispersed
Cla06g00750 Cla-Chr6:9993867 Cla08g01478 Cla-Chr8:27653586 2.89E-70 dispersed
Cla06g00750 Cla-Chr6:9993867 Cla10g01100 Cla-Chr10:25248923 7.33E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00750 - - csv:101205421 593.578