Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00753 ATGAAGAACGAACCCCCCGCCATAACGGAAAGGTCCATAGCTTTGTTACTAGGCCTGAAAACTTTCCCAGTGAGAGATTTATTGCAATGGCCTAAAAGGGGAGGAAACTTCCCCAGGTCTGGCTTCTGGGTAGTTCTTTGGGTTCAGCCCCTTGGTTCTCTAAGAGGAATTCATGGCTGTGACAGCTTTGCTGTACCATTTGCTTTTTTGGTAGTTGTGGTGTTTCTTGTTATCTCAGTTCTGATTTCTGAACTTCCAATTTGCATTTACAATGCTTGTATGCTATATAAAAGGAATTGTGGAAAGATTTTCTTGCTGACTGGTGGAGAAGAATCAAGGAAGAGGGCTTTCCGGTTTTCCAAGACAAATCTATTTATAAAGGGCATTCTCCAACCCAAAACATCAATACCACCACATTCTGTAGCTTCGATTGGCCAACAGATGCACCATCAACCTGAGTCGGTTCACATGCTCCTTCAACATTTGAATCTCCACAGCAATCATACTCAATACTTTCTTTCTTCAATGGAGCAATTACAGCATGATTCACACATTTCCCCACAAAATGCCATAACCCTTGAAAAAACAAATCCAGCAACCCAACAGGGCCAGGGGGCTTTCGGGTATATGCATCCAGTTACAGTTCGTTGGTTGATGATAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGTAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACTGCCAGCAATTGAAGTGTCTTCAAACTGTGTTCCATACCCACCACCGCAAACAACATATGATGATATCGTAGCCAATCCGAAGATCTTTATGACTTCCTTGGAAAAGCTCCACTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTTACTTCTCGTGGTGGCATTGAGAAGAGGGTTGGTGAAATGCAAACGAGGACCTTGCCAAAACCTGTCAGGGCAGCGATTGCAGTTTCTTTGCTGCCCATCAAGGATTTAGTCTACGTCTACAATGCTGGAAGAATATGTTGTTATAAGAGAGAGAAGATGGAAAGAAATTCTTCTCCATGCCCAAGTGCAGCGACAATTCCTATGCAAGGGATGACCTCTATGTTGCCGCCATCAGATAATCAGGCAGTGTCCCAGCAACCACGGATTACTGAACTTCCAGCAGGTGTATTCTATGGTCCTTTGGAAATATACTCGGAATATAAGTTAGGGAGCAATATATTTGAGCGCTTCAATGCCTTCTTTACAATTTCTCCGAGTTCGACATCACCGGCAGGAGGGTTTCCAGTGATTGGAGTCATTGACGGAAAATTTGATAGCGGATATCTTGTTACTGTTACTGTTGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCTGAGCAACCTTCTCAGCAGCAAGTTTTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGTGCTACCTCCACCGCACCAAATGCTCATCGCCGTCGTCGTCGGAAGAAATCTGAGATTAAGAGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCCAGACTCAAACCATTATACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCGGAACCAGACCTGAATATGGTCTATGCTGACAAAAATGAAGAAACCGAGGGCGGTGAGTCTCCTCAAACACCAGATAATGACACAAGCTATGTGGAAGGCGACTCCGGAGAGTATAAAACGGAAGAGAAGGAGGAGGAAGAAGAAGAAGATGAGGAGGAGGACTCGGAAGAAGATGCATCTCCACAAGGAATTGGTAATGTGGACGTTAACGTTTTTGTTGAGGAGGAACAGTGTGAGACGAGAACAGCCGAAGAGGATGTTAGAAAAGATAGTAGCATGGTCGGTGACGATAAAGAAGTTTACGCCGGGGATTCGGTAATGGTGGAGGTGGAGGCAAAGACAGAACCCGAACCAACAACAGCCATTAGAGAAGATTAA 2214 45.03 MKNEPPAITERSIALLLGLKTFPVRDLLQWPKRGGNFPRSGFWVVLWVQPLGSLRGIHGCDSFAVPFAFLVVVVFLVISVLISELPICIYNACMLYKRNCGKIFLLTGGEESRKRAFRFSKTNLFIKGILQPKTSIPPHSVASIGQQMHHQPESVHMLLQHLNLHSNHTQYFLSSMEQLQHDSHISPQNAITLEKTNPATQQGQGAFGYMHPVTVRWLMIEEERTEAGWGSRKELTMASTSFAGGKQLPAIEVSSNCVPYPPPQTTYDDIVANPKIFMTSLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKRVGEMQTRTLPKPVRAAIAVSLLPIKDLVYVYNAGRICCYKREKMERNSSPCPSAATIPMQGMTSMLPPSDNQAVSQQPRITELPAGVFYGPLEIYSEYKLGSNIFERFNAFFTISPSSTSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPSQQQVLQPVGAFAKDGATSTAPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMVYADKNEETEGGESPQTPDNDTSYVEGDSGEYKTEEKEEEEEEDEEEDSEEDASPQGIGNVDVNVFVEEEQCETRTAEEDVRKDSSMVGDDKEVYAGDSVMVEVEAKTEPEPTTAIRED 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10036298 10042815 + ClCG06G007770.2 Cla06g00753 274945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00753 737 SMART bright_3 272 350 IPR001606 GO:0003677
Cla06g00753 737 MobiDBLite consensus disorder prediction 686 709 - -
Cla06g00753 737 SUPERFAMILY ARID-like 268 319 IPR036431 GO:0003677
Cla06g00753 737 ProSiteProfiles ARID domain profile. 271 364 IPR001606 GO:0003677
Cla06g00753 737 SMART ARID_2 268 365 - -
Cla06g00753 737 MobiDBLite consensus disorder prediction 651 671 - -
Cla06g00753 737 Gene3D High mobility group box domain 509 604 IPR036910 -
Cla06g00753 737 SMART hmgende2 524 593 IPR009071 -
Cla06g00753 737 MobiDBLite consensus disorder prediction 625 737 - -
Cla06g00753 737 SUPERFAMILY HMG-box 518 597 IPR036910 -
Cla06g00753 737 Gene3D - 265 325 IPR036431 GO:0003677
Cla06g00753 737 Coils Coil 574 594 - -
Cla06g00753 737 MobiDBLite consensus disorder prediction 505 519 - -
Cla06g00753 737 CDD HMGB-UBF_HMG-box 525 589 - -
Cla06g00753 737 Pfam ARID/BRIGHT DNA binding domain 276 319 IPR001606 GO:0003677
Cla06g00753 737 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 225 664 - -
Cla06g00753 737 Pfam HMG (high mobility group) box 525 592 IPR009071 -
Cla06g00753 737 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 525 592 IPR009071 -
Cla06g00753 737 MobiDBLite consensus disorder prediction 496 532 - -
Cla06g00753 737 Coils Coil 650 670 - -
Cla06g00753 737 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 225 664 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00753 - - - bhj:120068345 763.451
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00753 Cla-Chr6:10036298 Cla09g01192 Cla-Chr9:14759850 1.03E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61270 PF00505 HMG_box 1.20E-13 CL0114 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00753 Cla_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0