Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00765 ATGGGTAAAGAAAAGATTCATATCAACATCGTGGTTATTGGCCATGTCGACTCTGGAAAGTCGACCACCACTGGTCATCTTATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAGAGATTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTGCTCGACAAACTTAAGGCAGAACGTGAACGTGGTATTACCATCGACATTGCTCTGTGGAAGTTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACTGGAACTTCACAGGCTGACTGTGCTGTCCTCATTATTGACTCCACTACTGGTGGTTTTGAGGCTGGTATTTCCAAGGATGGTCAGACCCGTGAGCACGCTCTTCTTGCTTTCACCCTTGGTGTCAAGCAAATGATCTGCTGCTGCAACAAGATGGATGCTACCACTCCCAAATACTCCAAGGCAAGGTACGACGAAATCGTGAAGGAAGTCTCATCTTACCTCAAGAAGGTCGGATACAACCCAGAAAAAATCCCTTTTGTTCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACCCTCCTTGAGGCTCTTGACTTGATCTCTGAGCCCAAGAGGCCCTCAGACAAGCCCCTCCGTCTCCCACTTCAGGACGTTTACAAGATTGGTGGTATTGGAACTGTCCCTGTTGGACGTGTTGAAACTGGTATCCTCAAGCCTGGTATGGTTGTCACCTTTGGACCAACTGGACTCACCACTGAAGTTAAGTCTGTTGAAATGCACCACGAGTCTCTGCCAGAGGCCTTGCCTGGTGACAATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTCGTTGCCTCAAACTCCAAGGATGACCCTGCCAAGGAGGCTGCCAACTTCACATCCCAGGTTATCATCATGAACCACCCTGGCCAGATTGGTAACGGTTATGCCCCAGTCCTTGATTGCCACACCTCCCACATTGCTGTTAAGTTTGCTGAGATCCTCACCAAGATTGATCGTCGATCTGGTAAGGAACTCGAAAAGGAGCCCAAATTCTTGAAGAACGGTGATGCCGGTATGGTTAAGATGGTTCCGACCAAGCCAATGGTTGTGGAGACATTCTCCTCATACCCACCATTGGGTCGTTTTGCTGTTCGTGATATGCGTCAAACCGTTGCAGTTGGTGTGATCAAGAGTGTGGAGAAGAAGGACCCAACAGGAGCCAAGGTCACCAAATCCGCTGTCAAGAAGAAATAA 1344 48.36 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFGPTGLTTEVKSVEMHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAVKKK 447
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 10170898 10173807 - ClCG06G007880.1 Cla06g00765 274957
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00765 447 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Cla06g00765 447 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cla06g00765 447 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Cla06g00765 447 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Cla06g00765 447 Gene3D - 1 228 IPR027417 -
Cla06g00765 447 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 446 - -
Cla06g00765 447 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cla06g00765 447 CDD EF1_alpha_II 230 320 - -
Cla06g00765 447 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Cla06g00765 447 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Cla06g00765 447 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Cla06g00765 447 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Cla06g00765 447 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Cla06g00765 447 Gene3D Translation factors 323 430 - -
Cla06g00765 447 Gene3D Translation factors 229 316 - -
Cla06g00765 447 Pfam Elongation factor Tu GTP binding domain 7 221 IPR000795 GO:0003924|GO:0005525
Cla06g00765 447 PANTHER TRANSLATION FACTOR 1 446 - -
Cla06g00765 447 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Cla06g00765 447 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Cla06g00765 447 CDD EF1_alpha_III 323 426 - -
Cla06g00765 447 CDD EF1_alpha 9 227 - -
Cla06g00765 447 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Cla06g00765 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02044 Cla-Chr2:35492147 Cla06g00765 Cla-Chr6:10170898 0 dispersed
Cla06g00765 Cla-Chr6:10170898 Cla09g01994 Cla-Chr9:37509304 0 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00765 K03231 - csv:101215193 884.789