Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00784 ATGGGAGACGTTTCAGGCGCCGCCGCCGCCGCCGGAACCAAGACCACAAAGCTTCCTATTCCAGGAAAGAGGAACATTCTCATCACCAGCGCTCTTCCATATGTCAACAACGTTCCTCACCTTGGCAACATCATTGGCTGTGTGTTGAGTGCTGATGTTTTTGCTCGATACTGTCGTCTTAGAGGTTATAACGCTATTTACATTTGCGGAACCGATGAGTATGGAACGGCGACGGAGACAAAAGCAATGGAAGAGAAATGCTCTCCTAAAGAGATTTGTGACAAGTATCACGCGATTCACAAAGAAGTTTATAATTGGTTTGGTATTAGTTTTGATGAGTTTGGCCGCACATCATCGCCACAGCAGACTGAAGTTTGTCAAGCAATATTTGGCAAACTATTGAAGAACAATTGGCTTTCTGAGAACACGATGCAACAGCTGTACTGTGATACTTGTGAGAGATTTTTAGCCGATCGGCTCGTTGAAGGCATATGTCCTACTCCAGGTTGTGAGTATGACTCCGCACGTGGTGATCAGTGTGAGAAGTGCGGGAAACTTCTAAATCCAACTGAATTGAAAGACCCTAGGTGCAAGATTGTCGATCGACGGCTGCTGCTTCCACCAGAGCTGGAGAAGAAGGCAATCAATAGCTCAAAGGGCCCTTCAAAGTCGGAAAATGTCTGTCAAACAACCCCACGTATCCGTGACACAAACCACATGTTTCTTGAACTTCCTTTGCTGAGAGAGAAACTGGAAGAATATATCAACAAGATGTCTGTGGCTGGATCTTGGAGCCAAAATGCTATTCAAGCAACACATGCTTGGCTTAAGGAAGGGTTGAAACCCCGGTGTATTACAAGAGATCTAAAGTGGGGGGTTCCCGTTCCACTTGAAAGGTTCAAGGACAAGGTCTTCTATGTCTGGTTTGATGCACCTATAGGATATGTCTCCATTACATCATGCTACACAAATGAATGGGAGAAATGGTGGAAGAATCCAGAAAATGTGGAGCTTTTTCAATTTATGGGAAAGGATAATGTGCCTTTCCACACGGTTATGTTTCCTTCTACTCTTCTTGGAACTGGAGAAGACTGGACCTTGATGAAAACCATTAGTGTTACTGAATATTTAAACTATGAAGCAGGAAAATTTTCTAAAAGTAAGGGCATAGGAGTTTTTGGTAATGATGCAAAAGATACAAATATTCCTGTAGAAGTATGGAGATATTACTTATTAGCCAATAGGCCTGAGGTTTCAGATACATTATTTACATGGGCTGATTTACAAGCAAAACTTAATGGCGAGTTGCTGAACAATTTGGGCAACTTCATTCATCGAGTTTTGAGCTTCATTGCTAAACCTTTAGGTGGAACTAGTAGGCATTTATATAGCTGCAACTGCAAGTTGGAAATGAATCTTGGTTATGGTTCCATTATTCCTGATGCTCTTGACGTGGACTCTCATGAATTAACATTGGGCTTGGCTGAAAAAGTTGGTAAATACGTAGACCAATATATGGAATCAATGGAGAAGGTTAAATTAAAACAAGGTCTGAAAGCTGCAATGGCTATTTCAAGTGAGGGAAATATATATTTGCAAACAGCACAGTTCTGGAATCTTTACAAGGCGGACAAACCTTCCTGCAATATTGTTATGAGAACTTCAGCTGGACTAGTACATCTTCTAGCATGTTTATTAGAACCTTTCATTCCTTCTTTCTCACTGGAGGTGTTTAGGCAGTTGGATTTACCTCCGGAACGACATATTTCGCTTTGTGAAGAAAAAGGAGACATTGAGAGAGCAAAACAACCTTGGAAGATCCTACCTTCTGGTCATAAGATTGGCACACCAGAGCCACTATTCAAAGAATTGAAAGACGAAGAAGTAGAACTGTACAGAGACAAGTTTGCTGGAAGTCAGGCTCAACGCATTGTGAGAGCAGAAGCTGAAGCAGAAAAGATTGCTGCTCAGCTAAAAAAAACTAACGTCTCAGATAACGTGACTTCGATTATGTTTATCAATATTTTTATCTGTGTATTGGAGCCCAATGGATTGATTAAGGCAGACATGGAATGGGCAAAATCCACAGGCAGCAAACCGAAAACAGCTGTGGAGCCAGAAATTACGATTACAAGACTGGATATCCGTGTTGGGTTAATTACAAAAGCTCAGAAGCATCCTGATGCTGATTCCCTATATGTCGAGGAAATCGATGTGGGAGAATCGCAACCTCGAACCGTTGTCAGTGGATTAGTCAAGTACATACCTCTTGAAGAGATGCAGAACCGGAAGGTGTGTGTTCTTTGCAACTTGAAGCCGGCAGCCATGAGGGGCATTAAATCTCAAGCCATGGTTCTTGCTGCTTCCAATAGCGATCATACCAAGGTGGAATTAGTTGAGCCACCCAAAGACGCCAATGTTGGAGAAAGAATTAAATTCCCAGGATTCGAAGGCGAGCCCGACGATGTATTGAACCCGAAGAAGAAGGTATGGGAGACACTGCAGGTAGATTTGGCTACTAACACAGACCTGGTGGCATGTTTTAAAGATATACCATTTACCACATCAGCTGGTGTTTGCAAAGTTTCTTCCATTTCTAGTGGTTCTATCAGGTAA 2616 42.35 MGDVSGAAAAAGTKTTKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEEKCSPKEICDKYHAIHKEVYNWFGISFDEFGRTSSPQQTEVCQAIFGKLLKNNWLSENTMQQLYCDTCERFLADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELKDPRCKIVDRRLLLPPELEKKAINSSKGPSKSENVCQTTPRIRDTNHMFLELPLLREKLEEYINKMSVAGSWSQNAIQATHAWLKEGLKPRCITRDLKWGVPVPLERFKDKVFYVWFDAPIGYVSITSCYTNEWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTGEDWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLANRPEVSDTLFTWADLQAKLNGELLNNLGNFIHRVLSFIAKPLGGTSRHLYSCNCKLEMNLGYGSIIPDALDVDSHELTLGLAEKVGKYVDQYMESMEKVKLKQGLKAAMAISSEGNIYLQTAQFWNLYKADKPSCNIVMRTSAGLVHLLACLLEPFIPSFSLEVFRQLDLPPERHISLCEEKGDIERAKQPWKILPSGHKIGTPEPLFKELKDEEVELYRDKFAGSQAQRIVRAEAEAEKIAAQLKKTNVSDNVTSIMFINIFICVLEPNGLIKADMEWAKSTGSKPKTAVEPEITITRLDIRVGLITKAQKHPDADSLYVEEIDVGESQPRTVVSGLVKYIPLEEMQNRKVCVLCNLKPAAMRGIKSQAMVLAASNSDHTKVELVEPPKDANVGERIKFPGFEGEPDDVLNPKKKVWETLQVDLATNTDLVACFKDIPFTTSAGVCKVSSISSGSIR 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10779648 10793828 + ClCG06G008040.2 Cla06g00784 274976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00784 871 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 161 197 IPR029038 -
Cla06g00784 871 Coils Coil 644 664 - -
Cla06g00784 871 Gene3D HUPs 22 157 IPR014729 -
Cla06g00784 871 ProSiteProfiles tRNA-binding domain profile. 709 812 IPR002547 GO:0000049
Cla06g00784 871 CDD Anticodon_Ia_Met 432 581 IPR041872 -
Cla06g00784 871 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 33 44 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cla06g00784 871 CDD MetRS_core 25 423 IPR033911 GO:0004825|GO:0006431
Cla06g00784 871 PANTHER METHIONINE--TRNA LIGASE 226 871 IPR023458 GO:0004825
Cla06g00784 871 PANTHER METHIONINE--TRNA LIGASE 8 200 IPR023458 GO:0004825
Cla06g00784 871 PANTHER METHIONINE--TRNA LIGASE CYTOPLASMIC 8 200 - -
Cla06g00784 871 Gene3D HUPs 209 438 IPR014729 -
Cla06g00784 871 PANTHER METHIONINE--TRNA LIGASE CYTOPLASMIC 226 871 - -
Cla06g00784 871 Pfam Anticodon binding domain of methionyl tRNA ligase 493 640 IPR041872 -
Cla06g00784 871 PRINTS Methionyl-tRNA synthetase signature 109 120 IPR033911 GO:0004825|GO:0006431
Cla06g00784 871 PRINTS Methionyl-tRNA synthetase signature 435 446 IPR033911 GO:0004825|GO:0006431
Cla06g00784 871 PRINTS Methionyl-tRNA synthetase signature 61 75 IPR033911 GO:0004825|GO:0006431
Cla06g00784 871 PRINTS Methionyl-tRNA synthetase signature 340 355 IPR033911 GO:0004825|GO:0006431
Cla06g00784 871 PRINTS Methionyl-tRNA synthetase signature 28 41 IPR033911 GO:0004825|GO:0006431
Cla06g00784 871 CDD tRNA_bind_EMAP-II_like 708 811 - -
Cla06g00784 871 Pfam Putative tRNA binding domain 715 809 IPR002547 GO:0000049
Cla06g00784 871 Gene3D - 439 623 - -
Cla06g00784 871 SUPERFAMILY Nucleotidylyl transferase 23 433 - -
Cla06g00784 871 Gene3D - 161 197 IPR029038 -
Cla06g00784 871 Pfam tRNA synthetases class I (M) 26 202 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cla06g00784 871 Pfam tRNA synthetases class I (M) 226 448 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cla06g00784 871 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 440 636 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cla06g00784 871 SUPERFAMILY Nucleic acid-binding proteins 710 869 IPR012340 -
Cla06g00784 871 Gene3D - 709 871 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00784 K01874 MARS, metG; methionyl-tRNA synthetase [EC:6.1.1.10] - csv:101208697 1489.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00311 Cla-Chr4:10913863 Cla06g00784 Cla-Chr6:10779648 5.61E-33 dispersed
Cla06g00784 Cla-Chr6:10779648 Cla07g00489 Cla-Chr7:6953216 8.01E-47 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g991 . Blo12g00110 Bda03g01132 . Bpe04g01075 . Bma04g01170 . . Cmo17g00087 . . . . . . . . . . . . . . Cla06g00784 Cam06g0838 Cec06g0853 Cco06g0867 Clacu06g0841 Cmu06g0813 Cre06g1593 . . . . . Csa02g00898 . . . . . . . . . . . . . . Cma17g00080 . Car17g00074 Cpe12g00074 . Bhi12g01467 . . . . . . . . . . . . . Lsi09g01114 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003190 3 1 3 3 3 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 2 2 1 3 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00784 Cla_Chr06 FPKM 5.849389 6.213799 8.035215 8.329912 36.010891 33.057137 38.236008 8.932423 8.875657 11.432347