Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00785 ATGGTGAAGAAACGTGTGCCGGATTGGCTCAATAGCTCTCTTTGGTCCTCCACTCCCGCTGTCGACGACGATCGCCTCCAGCGCTACACTTCCGAGCCGGCAGCCACCACTTCGTCCCCGGAACCCGTCGTCGAACCTCCTGTTCCGGTTCCGCCTCCGTCTGCGAGCACCGCCGTTAGAACCGAGTCTCCCAAGTCTGATACTAGAGACTCCAGGGCTAATAACAATGTCACCAACGACGATAATGGCACTTCCTCAGGCCCTTCTGCTGAGGATGTATCTCGCCAGGCACAGCTTGTTGTTGAGTTGTCGAAGAAGATCATAAATCTGCGTGAATTGCGTAAAATTGCGTCTCAGGGCATACCGGATGGTCCAGGAATTCGTTCAACCGTCTGGAAACTCCTATTGGGTTATCTGCCACCAGATCGTGGGCTCTGGACGTCTGAGTTAGCTAAAAAGAGGTCTCAATACAAGCATTTTAAAGAAGAGCTTTTGATGAATCCTTCCGAAATTTCAAGGAGGTTGGAGAAGGCCAAAAGTTACGAGCGTGACGAAACGAACAAGGGTCCACTCTCAAGGTCAGAAATAAGTCAAGAGGAACATCCTTTGAGTCTTGGGAAAACGAGCATCTGGAATCAGTACTTCCAGGACTCTGAGATTATAGAACAGATTGACCGAGATGTGAAGCGTACTCATCCAGATATGCACTTCTTCTCTGGGGACTCATCACTTGCAAAATCTAATCAGGAGGCCCTGAGAAATATCTTAATTGTATTTGCAAAGTTGAATCCAGGAATTAGATATGTACAAGGGATGAATGAAATTTTAGCTCCTCTATTCTATGTATTTAGAAGTGATCCTGATGAGGATAATGCGGTAACTTTTCTTTACACCCCCCATCTCCCATCCGCTGATGGTTATATGAATATTGATGATGCATCTGCTGAAGCAGACACGTTCTTTTGTTTTGTTGAGTTATTGAGTGGATTTAGGGATCATTTCTGCCAGCAATTGGATAATAGTGTTGTGGGAATTCGTGCCACAATCACAAAGTTGTCTCAACTTCTGAAGGAGCATGATGAAGAGCTCTGGCGTCACCTTGAGATCACAACCAAAGTAAACCCCCAGTTTTATGCATTTAGGTGGATCACTCTCCTCTTGACCCAAGAGTTCAATTTTGCAGACAGCCTTCACATATGGGATACAATTTTGAGTGATCCTGAGGGTCCTCTGGCGATTTTACGGCTAATCTCAAACTGCTACAACACTATCCCCCAGCAAACATCAGTCATTTGCTCTACGTCGCGAACAAGTTGCGTAAACAACCTTCGATCTGATCTCCTTTTCAACGCTGTAGTTCCTCTTGCGCTTCGTTCTCCTGCAACTACTTTACGCTTGTATTTGACGTGCATACGGAACACTCTTGAGGCCGCGATGTGCCTTCAGAATTTTCCTTGTCAAGAAGTTGAAAGACACAACAAGCCGGAGGTTGAACTGAAGTATGGACCAGCTCAGAACTTCTTCTCAATCCTACTACAATCTCGTGATGCCTCGGTATGGAGAACTGTTAATGTTCCTCATCGGAACACATTTTGTTTGATCTTAATATGTAGAAATGAGTCAGAGAAGTGTTTGATCGAGACATCTATAAACTCTCTCCGTATCAGCCTCAAGGTTAGGCAGACAGATGAACTGGAGAATATCCTAACTAAAAAGTTCCTTCGATTTCTGTCAATGAGGGCAGAAGCTTTTCAGGTGCTGAGAAGAAAACCTGTACAGGCCTTCAAAGATTGCCAAACTTTCAAGAGCTTTGACTGGCCATCTGCTGTCAGGTTGTGCACCACCTTGAAGCCCGCCCTAACAATGGACGCGGAGAGTCTTGGATAA 1887 45.63 MVKKRVPDWLNSSLWSSTPAVDDDRLQRYTSEPAATTSSPEPVVEPPVPVPPPSASTAVRTESPKSDTRDSRANNNVTNDDNGTSSGPSAEDVSRQAQLVVELSKKIINLRELRKIASQGIPDGPGIRSTVWKLLLGYLPPDRGLWTSELAKKRSQYKHFKEELLMNPSEISRRLEKAKSYERDETNKGPLSRSEISQEEHPLSLGKTSIWNQYFQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQEALRNILIVFAKLNPGIRYVQGMNEILAPLFYVFRSDPDEDNAVTFLYTPHLPSADGYMNIDDASAEADTFFCFVELLSGFRDHFCQQLDNSVVGIRATITKLSQLLKEHDEELWRHLEITTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTILSDPEGPLAILRLISNCYNTIPQQTSVICSTSRTSCVNNLRSDLLFNAVVPLALRSPATTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKYGPAQNFFSILLQSRDASVWRTVNVPHRNTFCLILICRNESEKCLIETSINSLRISLKVRQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQAFKDCQTFKSFDWPSAVRLCTTLKPALTMDAESLG 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10798022 10810951 - ClCG06G008050.2 Cla06g00785 274977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00785 628 MobiDBLite consensus disorder prediction 175 200 - -
Cla06g00785 628 MobiDBLite consensus disorder prediction 1 94 - -
Cla06g00785 628 ProSiteProfiles TBC/rab GAP domain profile. 122 407 IPR000195 -
Cla06g00785 628 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 3 417 - -
Cla06g00785 628 Gene3D - 464 601 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Cla06g00785 628 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 3 417 - -
Cla06g00785 628 MobiDBLite consensus disorder prediction 70 93 - -
Cla06g00785 628 MobiDBLite consensus disorder prediction 40 54 - -
Cla06g00785 628 Gene3D - 333 463 - -
Cla06g00785 628 Gene3D - 91 145 - -
Cla06g00785 628 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 344 410 IPR035969 -
Cla06g00785 628 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 101 366 IPR035969 -
Cla06g00785 628 Pfam Rab-GTPase-TBC domain 127 415 IPR000195 -
Cla06g00785 628 SMART tbc_4 117 432 IPR000195 -
Cla06g00785 628 MobiDBLite consensus disorder prediction 10 38 - -
Cla06g00785 628 SUPERFAMILY Arp2/3 complex subunits 463 595 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Cla06g00785 628 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 202 332 - -
Cla06g00785 628 MobiDBLite consensus disorder prediction 175 190 - -
Cla06g00785 628 Pfam ARP2/3 complex 20 kDa subunit (ARPC4) 461 595 IPR008384 GO:0005885|GO:0015629|GO:0030041|GO:0034314
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00785 K24796 TBC1D13; TBC1 domain family member 13 - csv:101208456 731.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00785 Cla-Chr6:10798022 Cla07g01430 Cla-Chr7:31515066 8.58E-25 dispersed
Cla06g00785 Cla-Chr6:10798022 Cla05g00990 Cla-Chr5:9946572 2.23E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g997 . . Bda03g01131 . Bpe04g01074 . Bma04g01171 . . Cmo17g00086 . . . . . . . . . . . . . . Cla06g00785 Cam06g0840 Cec06g0855 Cco06g0869 Clacu06g0843 Cmu06g0815 Cre06g1595 . . . . . Csa02g00897 . . . . . . . . . . . . . . Cma17g00079 . Car17g00073 Cpe12g00073 . Bhi12g01466 . . . . . Lcy13g0479 . . . . . . . Lsi09g01113 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004668 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 0 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00785 Cla_Chr06 FPKM 21.06196 22.900742 19.656109 19.820017 15.531425 16.642321 16.442495 19.151619 16.63339 18.484894