Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00852 ATGTCGTCTCCGGCTCCGACCTCGCCGCCGGCCACTAACACGACCTCACCCCCACCTCCCACCACCACCGCACCACCCCCAGCACCTCCGTCTCTCTCACCACCGCCGCCTCCCGACGCTTCCTCTCAGCCTCCACCTGCTTCATCTCCGCCGCCTTCCACCACTCCTTCGCCGCCCCCTCCGGACACTACCACTCCATCTACGCCTACTTCTTCTCCTTCACCGCCAACCACGCCTTCGAGCTCTTCGCCGCCGCCGCCTCCTCCTCCTCCGTCTACCAACTCGACTGCTCCCCCGCAGCTGCCGAGTCCGACGCCGCCCTCGGCTTCTGGCACACCTGCGAGTCCCGGAGCAAATCTGTCTCCGCCGTCTTCCTCACCATCGTCCGGTAATTCTGCCGGACTTGTAGCTGGAGTTGCTGTTGCTGGAGTTGTGGTAGTGGTTGTGGCGTTGATTGTTATGTTTTTGTGTTTAAGAAGGAAGAGAAGACGCGACGAGGAGGCTTACTACCGGCCCCCCCCGCCCGCGGCGTTTAAAGATGGCCCATATGGTCCACAACAGCACCACTGGCAATCACATCCCCCGCCGCCGCCGCCGTCAGATCATTTCGTGGGGTCAGTGCTGAAGCCGTCTCCTCCGCCAGCATCACGGCCACCGCTCTCACCTCCGATTATAAACAGCAGTGGAGGCTCTGGATCTCATTATTCAGGGTCTGAAAATTCGCTTGCTCCTGCTCCATCTTCAATTCCCTTGGGCTTCTCACAAAGCAGCTTCACTTATGAAGAGTTAGCAATGGCGACAGATGGGTTTTCAGAAGCCAACCTCCTCGGACAAGGTGGGTTTGGTTATGTTCATAAAGGAGTACTTCCAAATGGAAAGGAAGTGGCAGTGAAGCAACTTAAAGCTGGAAGTGGACAGGGAGAGCGTGAATTTCAAGCAGAAGTGGAAATAATCAGCCGAGTTCATCATAGACATCTTGTTTCCTTAGTGGGATATTGCATTACTGGCTCCAAAAGATTGCTGGTTTATGAATTTGTTCCCAACAACACATTGGAGTTCCACTTGCATGGTAATTCTCATCTTGCAGGCAAAGGACGACCCACCATGGACTGGCCAACGAGACTGAAAATTGCTTTGGGATCTGCCAAGGGATTAGCCTACCTTCATGAGGACTGTAATCCTAAGATTATTCATCGTGACATCAAAGCAGCAAATATACTTTTGGATCTCAAATTCGAAGCAAAGGTTGCAGATTTTGGGCTTGCTAAGTTGTCTTCTGATGTTAATACTCATGTTTCAACCCGAGTCATGGGAACTTTTGGATACCTTGCTCCTGAATATGCTTCAAGTGGGAAACTCACTGAGAAATCAGATGTCTTCTCCTTTGGAGTGATGCTTTTGGAGATGATTACTGGACGCAGACCTGTAGATACAACTCAATCATTCATGGACGATGGATTGCTTGATTGGGCAAGGCCATTACTGTTACGGGCCACCGAAGATGGGGTGTATGACGGTCTAGTAGATCCAAAGCTGAGAGATAACTATGACCACAACGAGATGGCTCGCATGGTTGCTTGCGCGGCTGCCTGTGTGCGCCATTCAGCTAGGCGCCGACCACGGATGAGTCAAGTGGTTCATGCTCTTGAAGGTGAAGCCTCACTTTCTGATCTTAATGAAGGGATTCGCCCTGGACATAGCTCTGTCTACAGTTCTTATGGAAGCTCTGACTACGACACAGCTCAGTACAATGAGGACCTGAAAAAGTTCAGGAAGATGGCGTTGGCGAGTCAGGAGTACGGCAGTGAGTACAGCGAGCCAACGAGTGAGTATGGTTTGTATCCATCTGGGTCGAGTGGCGATGGCCAAACAACCAGGGAAATGGAGGTGAGAACGATGAAGAAAGAAAGTGGAGGTTTTAATGGAAGCTCATAA 1935 51.94 MSSPAPTSPPATNTTSPPPPTTTAPPPAPPSLSPPPPPDASSQPPPASSPPPSTTPSPPPPDTTTPSTPTSSPSPPTTPSSSSPPPPPPPPSTNSTAPPQLPSPTPPSASGTPASPGANLSPPSSSPSSGNSAGLVAGVAVAGVVVVVVALIVMFLCLRRKRRRDEEAYYRPPPPAAFKDGPYGPQQHHWQSHPPPPPPSDHFVGSVLKPSPPPASRPPLSPPIINSSGGSGSHYSGSENSLAPAPSSIPLGFSQSSFTYEELAMATDGFSEANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGSKRLLVYEFVPNNTLEFHLHGNSHLAGKGRPTMDWPTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAKVADFGLAKLSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLEMITGRRPVDTTQSFMDDGLLDWARPLLLRATEDGVYDGLVDPKLRDNYDHNEMARMVACAAACVRHSARRRPRMSQVVHALEGEASLSDLNEGIRPGHSSVYSSYGSSDYDTAQYNEDLKKFRKMALASQEYGSEYSEPTSEYGLYPSGSSGDGQTTREMEVRTMKKESGGFNGSS 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12743205 12746209 + ClCG06G008590.2 Cla06g00852 275044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00852 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672|GO:0006468
Cla06g00852 644 SMART serkin_6 270 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00852 644 MobiDBLite consensus disorder prediction 601 644 - -
Cla06g00852 644 Gene3D Phosphorylase Kinase; domain 1 245 345 - -
Cla06g00852 644 MobiDBLite consensus disorder prediction 189 203 - -
Cla06g00852 644 SUPERFAMILY Protein kinase-like (PK-like) 245 549 IPR011009 -
Cla06g00852 644 Gene3D Transferase(Phosphotransferase) domain 1 346 560 - -
Cla06g00852 644 MobiDBLite consensus disorder prediction 112 132 - -
Cla06g00852 644 ProSiteProfiles Protein kinase domain profile. 270 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00852 644 MobiDBLite consensus disorder prediction 601 626 - -
Cla06g00852 644 MobiDBLite consensus disorder prediction 166 242 - -
Cla06g00852 644 MobiDBLite consensus disorder prediction 1 111 - -
Cla06g00852 644 ProSitePatterns Protein kinases ATP-binding region signature. 276 298 IPR017441 GO:0005524
Cla06g00852 644 PRINTS Proline rich extensin signature 40 61 - -
Cla06g00852 644 PRINTS Proline rich extensin signature 27 39 - -
Cla06g00852 644 PRINTS Proline rich extensin signature 3 19 - -
Cla06g00852 644 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 13 630 - -
Cla06g00852 644 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 13 630 - -
Cla06g00852 644 MobiDBLite consensus disorder prediction 1 132 - -
Cla06g00852 644 MobiDBLite consensus disorder prediction 222 242 - -
Cla06g00852 644 Pfam Protein tyrosine and serine/threonine kinase 274 549 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02542 Cla-Chr5:36770135 Cla06g00852 Cla-Chr6:12743205 4.54E-159 dispersed
Cla06g00852 Cla-Chr6:12743205 Cla07g00865 Cla-Chr7:24038856 0 dispersed
Cla11g00221 Cla-Chr11:2548037 Cla06g00852 Cla-Chr6:12743205 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80633 PF07714 PK_Tyr_Ser-Thr 4.60E-45 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00852 - - csv:101222748 845.884