Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00853 ATGATCGCTTCTTCGATTTCTTCTTCCTCTATCTCTTTTATCGTCATCTTTGTCCCCATCTTTATCTCCATCTCTTTTTTCCAATTTAAACCCTCTTCCGATCACACCGTATTCCAAACCCTAACTCGAAACTACTCACCCGTCGATCCATCTCCGTCCAAGAACCTCACTGACGGGAACCCGGTCTTGTGGAAGAACTACATTGTTCGCTTCGTCCAATACAGGGAGGCGAAGGAGCATCGGCTCTATCTGGAATCGCGTATTAGATCGGGCGGCTGGGAATGGATCGAGAGGCGGAACCCTGCGTCCAAGTATCCGACTGATTTCGGCTTGGTGTCAATTGAGGACTCGGTGAGAGGAGAGCTGATTGAGGAGATTGAAGAATTGGAGCTTGTGAAGGATGTGAATGTAGATGCAAGTCATGTCAGGGGTTTGTTAACCGAGGATGGGGGTAGAGTTGGGGCTTTTGTCGACGGGAAGAAGCGTCCGGGGAAGATTTTCACTTCCATGTCATTTAAAGAAGGAGGTGGGGAACGTTATACGGCAATTAGCAATGCCTCTAATAGATGGGGACGGCATCTGTCAATGGAGAGATCCCAAGTTACCTCACTATTTGGAGCAGACTCTCTTTGGGCAAAAGGGTATACGGGTTCCAAAGTCAAGATGGCTATATTCGATACTGGCATTCGTGCTAATCACCCACATTTTAGGAATATCAAGGAGCGAACAAATTGGACCAATGAAGATACTTTAAATGATAATCTTGGACATGGGACATTTGTTGCTGGTGTCATTGCAGGTGGAGATGAAGAATGTCTAGGCTTTGCTCCAGATACGGAGATATATGCTTTTCGTGTCTTTACAGATGCACAGGTGTCATACACTTCATGGTTCCTTGATGCATTCAACTATGCAATTGCTACCAACATGGATGTATTAAATTTAAGCATCGGTGGGCCAGATTACTTGGATCTTCCATTTGTGGAGAAGATTTGGGAAATAACAGCAAATAATATCATCATGGTTTCTGCAATTGGAAACGATGGACCACTTTATGGGACTTTAAACAATCCTGCAGATCAGAGTGACGTCATTGGCGTTGGTGGTATTGACTACAATGATCATATTGCTTCATTTTCCTCACGTGGCATGACTACTTGGGAGATGCCTCATGGTTATGGTCGTGTGAAGCCAGATGTTGTTGCATATGGTCGGGAAATTATGGGATCCAAAATTAGTACTGGGTGCAAAAGTTTATCAGGCACTAGTGTGGCGAGTCCTGTGGTTGCTGGTGTGGTATGTCTACTTGTTAGTATAATCCCTGAAAGCCAGCGGAAGGTTATTTTAAATCCAGCTAGCATGAAACAAGCACTTGTTGAGGGAGCTGCAAAGCTTGGTGGTCCTAATATGTATGAGCAAGGAGCTGGCAGAGTTGATCTGTTAGAATCGTATGAAATACTTAAGAGCTACCAACCCCGGGCGAGCATCTTCCCCGCTGTTCTTGACTATACAGATTGCCCTTATATGTGGCCCTTTTGTCGCCAACCTCTTTATGCAGGTGCAATGCCTACTATTTTCAATGCCACCATTTTGAATGGGATGGGTGTAATTGGCTATGTTGAAGGTCAACCCACTTGGCATCCTTTGGATGAAGAAGGAAATCTCTTGAGTATTCACTTCACTTATTCCAAGGTCATTTGGCCTTGGACTGGTTACATTGCACTTCATATGCAAATTAAGGAAGAAGGTGCACAATTTTCTGGAGAAATTGAGGGCAATGTGACTCTAACAGTATATAGTCCTCCATCGAGAGGAGAGAAGAACCGCCAGATTAGTACTTGTGTGTTACAGCTGAAGTTAAAAGTAGTTCCCACACCTCCAAGATCAAAACGAATTTTATGGGATCAGTTTCATAATATCAAATATCCTCCTGGTTATATTCCTAGAGATTCCTTGGATGTACGCAATGACATTCTGGACTGGCATGGAGACCACCTGCATACAAATTTTCATATCATGTTTAACATGTTAAGAGATGCTGGGTACTATGTTGAAACACTTGGTTCTCCTCTTACATGCTTTGATGCTCGCCAATATGGGACACTTCTACTAGTGGATCTTGAAGACGAGTACTTCAAAGAGGAAATTGAAAAGTTGAGGGACGATGTTATGATTACTGGATTGGGATTGGCTGTGTTTTCTGAATGGTATAATGTAGAAACAATGGTAAAGATGAGGTTTTTTGATGACAACACAAGAAGCTGGTGGACACCAGTTACTGGAGGTGCAAATATTCCTGCACTCAATGATCTTTTAGCCCCATTTGGTATTGCTTTTGGGGATAAGATTTTGAATGGTGATTTTTCTATTGATGGTGAACAGAGTCGGTATGCGTCAGGAACAGATATTGTGAGGTTTCCACAAGGTGGTTATGTGCATAGTTTCCCCTTCGTTGATAGCTCAGAGAGTGGGGCGGCTCAGAGCATACTAACATCTAGCATGAGTAAGGCAGACTTTCCGATTCTTGGCCTATTAGAGGCAGGAGAAGGCCGCATTGCAGTCTATGGAGATTCAAATTGTCTGGATAGCAGTCATATGGTTACAAACTGCTATTGGCTGCTGAGAAAAATATTAGATTTTACCAGTGGAAATATTAGAGATCCAGTTCTATTCACTAAATTTTCGAAACAAAATTCACCTCTGTATCTAGAAGATAACAAACTACCATCTCGAAGAAGTGATGTAAACTTCTCTTTGTATTCTGCTGTTGCTGGAAAGGAATTGATATGCAGGAGTGATTCTAGGTTTGAAGTATGGGGAACCAAGGGATACAGTATACAGGTCAGGGGAAGAAATCGAAGGCTGCCTGGATTTCCCGTAATAGACTTGGGAAGAGGCTTGAATTCTACTCCTGAGAGTTCTTCGAGGGGACCTCCAAAGTTGATGTTAAAAAACCGAAGAGATACATATGGAAACCGATACTTAAGTTTGTTCTACCGAGATGAGCCTGACATGCCTTTGATTGTTCCTAATCATTGGCTTGTTCCTGCTGTAGTTGCATTAACAGGGCTTTTGCTCCTTTTGAGTTTTTGGCGGATTAGACAGAAGCGGCGACGACGACGCAGAGGATCTGGATCTGCACGTTTTTCGAATATATAG 3159 43.08 MIASSISSSSISFIVIFVPIFISISFFQFKPSSDHTVFQTLTRNYSPVDPSPSKNLTDGNPVLWKNYIVRFVQYREAKEHRLYLESRIRSGGWEWIERRNPASKYPTDFGLVSIEDSVRGELIEEIEELELVKDVNVDASHVRGLLTEDGGRVGAFVDGKKRPGKIFTSMSFKEGGGERYTAISNASNRWGRHLSMERSQVTSLFGADSLWAKGYTGSKVKMAIFDTGIRANHPHFRNIKERTNWTNEDTLNDNLGHGTFVAGVIAGGDEECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNMDVLNLSIGGPDYLDLPFVEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMTTWEMPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPVVAGVVCLLVSIIPESQRKVILNPASMKQALVEGAAKLGGPNMYEQGAGRVDLLESYEILKSYQPRASIFPAVLDYTDCPYMWPFCRQPLYAGAMPTIFNATILNGMGVIGYVEGQPTWHPLDEEGNLLSIHFTYSKVIWPWTGYIALHMQIKEEGAQFSGEIEGNVTLTVYSPPSRGEKNRQISTCVLQLKLKVVPTPPRSKRILWDQFHNIKYPPGYIPRDSLDVRNDILDWHGDHLHTNFHIMFNMLRDAGYYVETLGSPLTCFDARQYGTLLLVDLEDEYFKEEIEKLRDDVMITGLGLAVFSEWYNVETMVKMRFFDDNTRSWWTPVTGGANIPALNDLLAPFGIAFGDKILNGDFSIDGEQSRYASGTDIVRFPQGGYVHSFPFVDSSESGAAQSILTSSMSKADFPILGLLEAGEGRIAVYGDSNCLDSSHMVTNCYWLLRKILDFTSGNIRDPVLFTKFSKQNSPLYLEDNKLPSRRSDVNFSLYSAVAGKELICRSDSRFEVWGTKGYSIQVRGRNRRLPGFPVIDLGRGLNSTPESSSRGPPKLMLKNRRDTYGNRYLSLFYRDEPDMPLIVPNHWLVPAVVALTGLLLLLSFWRIRQKRRRRRRGSGSARFSNI 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12747249 12753716 - ClCG06G008600.1 Cla06g00853 275045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00853 1052 ProSiteProfiles Serine proteases, subtilase domain profile. 193 487 - -
Cla06g00853 1052 ProSitePatterns Serine proteases, subtilase family, histidine active site. 257 267 IPR022398 -
Cla06g00853 1052 Gene3D Peptidase S8/S53 domain 194 485 IPR036852 GO:0004252|GO:0006508
Cla06g00853 1052 Pfam Subtilase family 217 468 IPR000209 GO:0006508|GO:0008236
Cla06g00853 1052 PANTHER MEMBRANE-BOUND TRANSCRIPTION FACTOR SITE-1 PROTEASE 64 879 - -
Cla06g00853 1052 PRINTS Subtilisin serine protease family (S8) signature 253 266 IPR015500 -
Cla06g00853 1052 PRINTS Subtilisin serine protease family (S8) signature 217 236 IPR015500 -
Cla06g00853 1052 PRINTS Subtilisin serine protease family (S8) signature 420 436 IPR015500 -
Cla06g00853 1052 CDD Peptidases_S8_SKI-1_like 211 467 IPR034185 -
Cla06g00853 1052 PANTHER PEPTIDASE S8 64 879 - -
Cla06g00853 1052 ProSitePatterns Serine proteases, subtilase family, serine active site. 421 431 IPR023828 -
Cla06g00853 1052 SUPERFAMILY Subtilisin-like 203 482 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00436 Cla-Chr1:4714009 Cla06g00853 Cla-Chr6:12747249 6.24E-06 dispersed
Cla06g00853 Cla-Chr6:12747249 Cla05g01608 Cla-Chr5:27377695 8.05E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00853 K08653 - csv:101222509 1961.04