Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla06g00866 | ATGAATGCAGAAGAATTAGGCAAACTAGGCGAAAGGATGGGTTCAAGGGATAAAGACTCTACGACTCACCATCAGCCGTTATTGAGCAGCCTTGTTGTCCGGCCTTCGAATAGTGACGGAGGTGGTGGTGGAGTCGGTGGAACCAGTGGCGGCCGCGTTGGTCGTGGAAGCGATTATGAGCCCGGTTCAGTTTCTCCAACACGCCGTCGGGATGTTCACCGATATATTTCTGATTTTGATCATTCTGGTGGTCTCGCTCGCAGTCGTGAATTTGGTGGTGGGAGGGATCTTGGTAGATATCGAGATACTTCACCTCATTACAGTCGAAGAATAAGTGGTGGCAGGCCATTTGGAAGAGGTGTTGATGGCCCTGGACTTGCTTCTGGGCCATTTCGTGGGGAACGTAGTAAAAACAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTCTATGTGACAACCTAAACTTTGCAAGACGAGAATTTTGTAACAACTGCAATAGACCCCGCACTGGAGCTGGTGGAAGTCCTCGAAGAGGTTATGTTGGTCCATCCCTGCATTCTCCTCCTAGGCGCTTTGCTGCGCACCCAGTTGAACGTTCTCCTGGCAGGACTCTTAGTGAATATAGGTCTCCTCCCCGTAGTTGGGCCAGGGATGGTCCTAGGGAGATTGCAGCTGGTGGCCTGGCACCTCCAAGGTATGAAAGCAGCCGGTATTCCGATCACCTGCGAAGAGACAGGGTGGACTATCTAGAAGACAGCTTCAGAGGAAGATCGAAGTTCGATAGGCCAGTTCCTTCAGCAGATTGGGCCCTTAGAGACAATGGAAGGGATGATTTCATCACAGAGAGGAAGGGATTTGAAAGAAGGCCACCATCCCCACCACTGTCGTTGCTTCCTCAGCGTGGGCGCTGGGCGCGTGAAGTGAGGGAGAGGAGCCGTTCCCCAATCAGAGGTCCCGTCAGATCTCCATTAAGAGTCTCGCTACGGTCTCCATTAAGTAGTGGCCTTCCACCAAAAGACTTCCGTAGAGATGTTTTCGTTGAAAGGGAGCGGGATGATAGGCGTGGCCTAGGACGAGATCGCGATGGAGTCTTGCCGGAGCATCCTCATTTTCAGTCTCAGCCTCCGTGTCAACAATCAGAGTCACCGGCCGTCATGGTGGTGCAGAGTCAGTCGCAGCCACAGTCCCCACAACATTTGACGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAGGCTCTTTTCCATGGTGACCATGCCAACAACTTGGCTTATATTCAACAGGCAGCAAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCACTTCAAAGAAAAGAAAAGGTCCAGAGCTATGCTTTGGCCCTGTAGGGAAGGATTCCCCCCTCAACAGCATACCACAATTTCATCAGGCAAATAATGTAATGTCTTCAGGCACGTCTACTTCATCTCCCTTCCCAGTTGCTCATGTTGGAAATGGCAGCCCTGCAGCATCGGGGCCTTCAAAGTTCTCATTCAGGTCCTTATTAGCTGACCTCATCCAACCGCATGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTTTCAAGTGAAGTTGCCAAGAAAATAGCAGAACAAAGAAATGCTGAGAAACAGATAAATGACCCACCACAGATTTCTCGTGCTTCATCTACTGTTGATGAGTCACAGCATCAGAAGGCCGAAGAGAAAGCTGCAGATGGCGAGTGTGGAAGTTCAAACCGAAGTGATAGGAGTGTACATGATAATTCCAATTCAGATAGTTCGGATATTACAAAAGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGATGAACGAGATACAATGTTCATGGGAGCTGGTCTAGCTGATGGGTCGGCAGGCCATGATTGCAACACATCATCACACATGCCTGATAAGTCTGTGTCAGAAGTCTACATCGAGCAAGAACGGATTGTGTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTGGGAGAGATAAAAGAAACAAAATTCACTTGTAGAAGCGAAGTGGGGAATGAAAATCTCAGCAACAATTTCACCTCAAATAATGGGTGCCAACAGAGATCTATTAGCAATGGGGTTGTAAAAAATGTGGCTCTCTCGGCACACAGAATACCGCCAGTCGGCGCTGCAGCTCGTCATCCAAATAACGATCTCCTACTCAAAATTCTACCACTTCCTAAAAATAGTAAGAGTAAACCACAAGTTGACAGAGAAGTCTAG | 2334 | 48.33 | MNAEELGKLGERMGSRDKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEPGSVSPTRRRDVHRYISDFDHSGGLARSREFGGGRDLGRYRDTSPHYSRRISGGRPFGRGVDGPGLASGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTGAGGSPRRGYVGPSLHSPPRRFAAHPVERSPGRTLSEYRSPPRSWARDGPREIAAGGLAPPRYESSRYSDHLRRDRVDYLEDSFRGRSKFDRPVPSADWALRDNGRDDFITERKGFERRPPSPPLSLLPQRGRWAREVRERSRSPIRGPVRSPLRVSLRSPLSSGLPPKDFRRDVFVERERDDRRGLGRDRDGVLPEHPHFQSQPPCQQSESPAVMVVQSQSQPQSPQHLTANILCSENCKCMDCKNFEGSEERQALFHGDHANNLAYIQQAANAAITGAIGSSGYACLPTSKKRKGPELCFGPVGKDSPLNSIPQFHQANNVMSSGTSTSSPFPVAHVGNGSPAASGPSKFSFRSLLADLIQPHDLKELCSVLVVFSSEVAKKIAEQRNAEKQINDPPQISRASSTVDESQHQKAEEKAADGECGSSNRSDRSVHDNSNSDSSDITKARPMSPGTLALMCDERDTMFMGAGLADGSAGHDCNTSSHMPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETKFTCRSEVGNENLSNNFTSNNGCQQRSISNGVVKNVALSAHRIPPVGAAARHPNNDLLLKILPLPKNSKSKPQVDREV | 777 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 13008632 | 13024400 | - | ClCG06G008750.2 | Cla06g00866 | 275058 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla06g00866 | 777 | MobiDBLite | consensus disorder prediction | 357 | 385 | - | - | |
| Cla06g00866 | 777 | MobiDBLite | consensus disorder prediction | 64 | 85 | - | - | |
| Cla06g00866 | 777 | PANTHER | PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 | 406 | 730 | - | - | |
| Cla06g00866 | 777 | SMART | zf_4 | 147 | 173 | IPR001876 | - | |
| Cla06g00866 | 777 | MobiDBLite | consensus disorder prediction | 92 | 108 | - | - | |
| Cla06g00866 | 777 | MobiDBLite | consensus disorder prediction | 585 | 614 | - | - | |
| Cla06g00866 | 777 | MobiDBLite | consensus disorder prediction | 568 | 584 | - | - | |
| Cla06g00866 | 777 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Cla06g00866 | 777 | MobiDBLite | consensus disorder prediction | 564 | 629 | - | - | |
| Cla06g00866 | 777 | ProSitePatterns | Zinc finger RanBP2-type signature. | 149 | 170 | IPR001876 | - | |
| Cla06g00866 | 777 | MobiDBLite | consensus disorder prediction | 1 | 147 | - | - | |
| Cla06g00866 | 777 | MobiDBLite | consensus disorder prediction | 288 | 327 | - | - | |
| Cla06g00866 | 777 | MobiDBLite | consensus disorder prediction | 171 | 242 | - | - | |
| Cla06g00866 | 777 | MobiDBLite | consensus disorder prediction | 357 | 372 | - | - | |
| Cla06g00866 | 777 | PANTHER | TESMIN/TSO1-RELATED | 406 | 730 | IPR028307 | - | |
| Cla06g00866 | 777 | SUPERFAMILY | Ran binding protein zinc finger-like | 137 | 176 | IPR036443 | - | |
| Cla06g00866 | 777 | Gene3D | - | 135 | 176 | - | - | |
| Cla06g00866 | 777 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 145 | 176 | IPR001876 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla06g00866 | Cla11g00214 | CCT | |
| Cla06g00866 | Cla11g00214 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla03g00030 | Cla-Chr3:313168 | Cla06g00866 | Cla-Chr6:13008632 | 1.67E-06 | transposed | |
| Cla11g00214 | Cla-Chr11:2487351 | Cla06g00866 | Cla-Chr6:13008632 | 5.79E-108 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla06g00866 | - | - | csv:101222405 | 621.313 |