Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00866 ATGAATGCAGAAGAATTAGGCAAACTAGGCGAAAGGATGGGTTCAAGGGATAAAGACTCTACGACTCACCATCAGCCGTTATTGAGCAGCCTTGTTGTCCGGCCTTCGAATAGTGACGGAGGTGGTGGTGGAGTCGGTGGAACCAGTGGCGGCCGCGTTGGTCGTGGAAGCGATTATGAGCCCGGTTCAGTTTCTCCAACACGCCGTCGGGATGTTCACCGATATATTTCTGATTTTGATCATTCTGGTGGTCTCGCTCGCAGTCGTGAATTTGGTGGTGGGAGGGATCTTGGTAGATATCGAGATACTTCACCTCATTACAGTCGAAGAATAAGTGGTGGCAGGCCATTTGGAAGAGGTGTTGATGGCCCTGGACTTGCTTCTGGGCCATTTCGTGGGGAACGTAGTAAAAACAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTCTATGTGACAACCTAAACTTTGCAAGACGAGAATTTTGTAACAACTGCAATAGACCCCGCACTGGAGCTGGTGGAAGTCCTCGAAGAGGTTATGTTGGTCCATCCCTGCATTCTCCTCCTAGGCGCTTTGCTGCGCACCCAGTTGAACGTTCTCCTGGCAGGACTCTTAGTGAATATAGGTCTCCTCCCCGTAGTTGGGCCAGGGATGGTCCTAGGGAGATTGCAGCTGGTGGCCTGGCACCTCCAAGGTATGAAAGCAGCCGGTATTCCGATCACCTGCGAAGAGACAGGGTGGACTATCTAGAAGACAGCTTCAGAGGAAGATCGAAGTTCGATAGGCCAGTTCCTTCAGCAGATTGGGCCCTTAGAGACAATGGAAGGGATGATTTCATCACAGAGAGGAAGGGATTTGAAAGAAGGCCACCATCCCCACCACTGTCGTTGCTTCCTCAGCGTGGGCGCTGGGCGCGTGAAGTGAGGGAGAGGAGCCGTTCCCCAATCAGAGGTCCCGTCAGATCTCCATTAAGAGTCTCGCTACGGTCTCCATTAAGTAGTGGCCTTCCACCAAAAGACTTCCGTAGAGATGTTTTCGTTGAAAGGGAGCGGGATGATAGGCGTGGCCTAGGACGAGATCGCGATGGAGTCTTGCCGGAGCATCCTCATTTTCAGTCTCAGCCTCCGTGTCAACAATCAGAGTCACCGGCCGTCATGGTGGTGCAGAGTCAGTCGCAGCCACAGTCCCCACAACATTTGACGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAGGCTCTTTTCCATGGTGACCATGCCAACAACTTGGCTTATATTCAACAGGCAGCAAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCACTTCAAAGAAAAGAAAAGGTCCAGAGCTATGCTTTGGCCCTGTAGGGAAGGATTCCCCCCTCAACAGCATACCACAATTTCATCAGGCAAATAATGTAATGTCTTCAGGCACGTCTACTTCATCTCCCTTCCCAGTTGCTCATGTTGGAAATGGCAGCCCTGCAGCATCGGGGCCTTCAAAGTTCTCATTCAGGTCCTTATTAGCTGACCTCATCCAACCGCATGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTTTCAAGTGAAGTTGCCAAGAAAATAGCAGAACAAAGAAATGCTGAGAAACAGATAAATGACCCACCACAGATTTCTCGTGCTTCATCTACTGTTGATGAGTCACAGCATCAGAAGGCCGAAGAGAAAGCTGCAGATGGCGAGTGTGGAAGTTCAAACCGAAGTGATAGGAGTGTACATGATAATTCCAATTCAGATAGTTCGGATATTACAAAAGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGATGAACGAGATACAATGTTCATGGGAGCTGGTCTAGCTGATGGGTCGGCAGGCCATGATTGCAACACATCATCACACATGCCTGATAAGTCTGTGTCAGAAGTCTACATCGAGCAAGAACGGATTGTGTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTGGGAGAGATAAAAGAAACAAAATTCACTTGTAGAAGCGAAGTGGGGAATGAAAATCTCAGCAACAATTTCACCTCAAATAATGGGTGCCAACAGAGATCTATTAGCAATGGGGTTGTAAAAAATGTGGCTCTCTCGGCACACAGAATACCGCCAGTCGGCGCTGCAGCTCGTCATCCAAATAACGATCTCCTACTCAAAATTCTACCACTTCCTAAAAATAGTAAGAGTAAACCACAAGTTGACAGAGAAGTCTAG 2334 48.33 MNAEELGKLGERMGSRDKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEPGSVSPTRRRDVHRYISDFDHSGGLARSREFGGGRDLGRYRDTSPHYSRRISGGRPFGRGVDGPGLASGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTGAGGSPRRGYVGPSLHSPPRRFAAHPVERSPGRTLSEYRSPPRSWARDGPREIAAGGLAPPRYESSRYSDHLRRDRVDYLEDSFRGRSKFDRPVPSADWALRDNGRDDFITERKGFERRPPSPPLSLLPQRGRWAREVRERSRSPIRGPVRSPLRVSLRSPLSSGLPPKDFRRDVFVERERDDRRGLGRDRDGVLPEHPHFQSQPPCQQSESPAVMVVQSQSQPQSPQHLTANILCSENCKCMDCKNFEGSEERQALFHGDHANNLAYIQQAANAAITGAIGSSGYACLPTSKKRKGPELCFGPVGKDSPLNSIPQFHQANNVMSSGTSTSSPFPVAHVGNGSPAASGPSKFSFRSLLADLIQPHDLKELCSVLVVFSSEVAKKIAEQRNAEKQINDPPQISRASSTVDESQHQKAEEKAADGECGSSNRSDRSVHDNSNSDSSDITKARPMSPGTLALMCDERDTMFMGAGLADGSAGHDCNTSSHMPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETKFTCRSEVGNENLSNNFTSNNGCQQRSISNGVVKNVALSAHRIPPVGAAARHPNNDLLLKILPLPKNSKSKPQVDREV 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13008632 13024400 - ClCG06G008750.2 Cla06g00866 275058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00866 777 MobiDBLite consensus disorder prediction 357 385 - -
Cla06g00866 777 MobiDBLite consensus disorder prediction 64 85 - -
Cla06g00866 777 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 406 730 - -
Cla06g00866 777 SMART zf_4 147 173 IPR001876 -
Cla06g00866 777 MobiDBLite consensus disorder prediction 92 108 - -
Cla06g00866 777 MobiDBLite consensus disorder prediction 585 614 - -
Cla06g00866 777 MobiDBLite consensus disorder prediction 568 584 - -
Cla06g00866 777 MobiDBLite consensus disorder prediction 1 23 - -
Cla06g00866 777 MobiDBLite consensus disorder prediction 564 629 - -
Cla06g00866 777 ProSitePatterns Zinc finger RanBP2-type signature. 149 170 IPR001876 -
Cla06g00866 777 MobiDBLite consensus disorder prediction 1 147 - -
Cla06g00866 777 MobiDBLite consensus disorder prediction 288 327 - -
Cla06g00866 777 MobiDBLite consensus disorder prediction 171 242 - -
Cla06g00866 777 MobiDBLite consensus disorder prediction 357 372 - -
Cla06g00866 777 PANTHER TESMIN/TSO1-RELATED 406 730 IPR028307 -
Cla06g00866 777 SUPERFAMILY Ran binding protein zinc finger-like 137 176 IPR036443 -
Cla06g00866 777 Gene3D - 135 176 - -
Cla06g00866 777 ProSiteProfiles Zinc finger RanBP2 type profile. 145 176 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00866 - - - csv:101222405 621.313
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla06g00866 Cla11g00214 CCT
Cla06g00866 Cla11g00214 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00030 Cla-Chr3:313168 Cla06g00866 Cla-Chr6:13008632 1.67E-06 transposed
Cla11g00214 Cla-Chr11:2487351 Cla06g00866 Cla-Chr6:13008632 5.79E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g318 Blo01g00513 Blo16g01025 Bda01g02058 Bda11g01097 . Bpe02g02248 . . . . Cma05g01345 Cma12g01257 Car05g01259 Car12g01226 . . Cpe18g00421 . . . . . . . Cla11g00214 . Cec11g0247 Cco11g0258 Clacu11g0377 Cmu11g0227 Cre11g0724 Cone2ag0303 Cone16ag0733 Cone4ag0740 . Lsi06g00857 Csa02g00117 Chy05g01376 . . . . . . Bpe13g01292 Bma01g00192 . Sed08g0784 Cmo05g01354 Cmo12g01288 Cma10g00634 . Car10g00582 Car11g00499 Cpe11g01118 Cpe07g01018 Bhi06g02018 Tan08g0159 Cmetu05g1534 . . . . Cla06g00866 . Cec06g0949 Cco06g0974 Clacu06g0939 Cmu06g0906 Cre06g1689 Lsi11g00253 . Chy02g01850 Cme05g01983
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla06g00599 . 171 494 CPP Transcription Factor Family AT3G22760 50.2 2.9e-76 283.1
Cla08g01314 . 325 450 CPP Transcription Factor Family AT3G22780 57.1 2.6e-38 157.5
Cla08g01314 . 297 450 CPP Transcription Factor Family AT4G14770 51.3 5.9e-40 162.9
Cla11g00214 CCT,ECH 667 1096 CPP Transcription Factor Family AT2G20110 61.9 5.8e-142 501.5
Cla08g01314 . 325 459 CPP Transcription Factor Family AT3G04850 52.2 6.0e-37 152.9
Cla11g00214 CCT,ECH 604 1103 CPP Transcription Factor Family AT4G29000 56.8 1.5e-151 533.5
Cla06g00866 CCT,ECH 407 730 CPP Transcription Factor Family AT4G29000 51.5 2.3e-75 280.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007101 1 4 1 1 1 1 2 1 1 1 1 0 2 1 1 0 1 2 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00866 Cla_Chr06 FPKM 30.048889 0.0 0.0 46.8843 26.748144 32.897404 29.054369 0.0 0.0 0.0