Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00895 ATGGAGACTGAGTCTAGAATTTTAAACCCATCTCCTCCGCCGTCGCCGTCATCATCTGGAAGTTTATCCACGGTTCCCGATCATCACCCGTCGTCGTCGTCGTCGTCGTCGGCGGTCGAGTCGAACCGGAAACGAGGGAAACGGCCGAGAGAAAATAACAACAACAATAGTAAACACCCGGTTTTCCGTGGGGTCCGAATGAGGGCTTGGGGAAAGTGGGTTTCCGAAATTCGTGAACCCCGAAAAAAAAGCCGGATCTGGCTCGGCACTTTCTCCACCCCTGAAATGGCCGCACGTGCTCACGACGTCGCCGCCCTCGCCATTAAAGGCACCGCCGCCATTCTCAACTTCCCTGAACTCGCCCATCACTTCCCCCGCCCCGCCTCCTCCTCCCCCCGCGACGTTCAGGCCGCCGCCGCCAAAGCCGCCGCCATGGAAATCCCAACTCCCTCACTTTTTTCCTCTTCCTCCTCCGCCTCCTCCTCCTCCTCTTCCTCCTCCGCCTTGTGTCCATCCTCGCCGGAGGAACTGAGTGAAATCCTGGAACTCCCGAGTTTAGGAACGAGTTACGAAACAGCCGAGTTAGGAAACGAGTTCGTATTCGTGGACTCAGTGGAAGGCTGGCTTTATTCTTACCCATGGTATAACAGAGTCAATAATGCAGATCACCAAGTACAAGAGGATTATGGATTCTTCAAAGAACAGATTTTAATGGCGGATTATACAGACACTTTAATTCCATCTTCAACTTTCGAAGCTTTCTTATGGCAAAATTAA 777 52.77 METESRILNPSPPPSPSSSGSLSTVPDHHPSSSSSSSAVESNRKRGKRPRENNNNNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGTAAILNFPELAHHFPRPASSSPRDVQAAAAKAAAMEIPTPSLFSSSSSASSSSSSSSALCPSSPEELSEILELPSLGTSYETAELGNEFVFVDSVEGWLYSYPWYNRVNNADHQVQEDYGFFKEQILMADYTDTLIPSSTFEAFLWQN 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13807124 13807900 + ClCG06G009005.1 Cla06g00895 275087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00895 258 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
Cla06g00895 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 257 - -
Cla06g00895 258 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677
Cla06g00895 258 MobiDBLite consensus disorder prediction 1 63 - -
Cla06g00895 258 CDD AP2 62 120 IPR001471 GO:0003700|GO:0006355
Cla06g00895 258 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700|GO:0006355
Cla06g00895 258 SMART rav1_2 61 124 IPR001471 GO:0003700|GO:0006355
Cla06g00895 258 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700|GO:0006355
Cla06g00895 258 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 19 257 - -
Cla06g00895 258 MobiDBLite consensus disorder prediction 20 40 - -
Cla06g00895 258 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Cla06g00895 258 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00895 Cla-Chr6:13807124 Cla11g01484 Cla-Chr11:28476465 2.75E-65 dispersed
Cla11g00204 Cla-Chr11:2372697 Cla06g00895 Cla-Chr6:13807124 3.98E-65 wgd
Cla06g00895 Cla-Chr6:13807124 Cla09g00162 Cla-Chr9:1696022 1.14E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61278 PF00847 AP2 2.30E-13 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00895 K09286 - csv:101219745 339.732