Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla06g00895 | ATGGAGACTGAGTCTAGAATTTTAAACCCATCTCCTCCGCCGTCGCCGTCATCATCTGGAAGTTTATCCACGGTTCCCGATCATCACCCGTCGTCGTCGTCGTCGTCGTCGGCGGTCGAGTCGAACCGGAAACGAGGGAAACGGCCGAGAGAAAATAACAACAACAATAGTAAACACCCGGTTTTCCGTGGGGTCCGAATGAGGGCTTGGGGAAAGTGGGTTTCCGAAATTCGTGAACCCCGAAAAAAAAGCCGGATCTGGCTCGGCACTTTCTCCACCCCTGAAATGGCCGCACGTGCTCACGACGTCGCCGCCCTCGCCATTAAAGGCACCGCCGCCATTCTCAACTTCCCTGAACTCGCCCATCACTTCCCCCGCCCCGCCTCCTCCTCCCCCCGCGACGTTCAGGCCGCCGCCGCCAAAGCCGCCGCCATGGAAATCCCAACTCCCTCACTTTTTTCCTCTTCCTCCTCCGCCTCCTCCTCCTCCTCTTCCTCCTCCGCCTTGTGTCCATCCTCGCCGGAGGAACTGAGTGAAATCCTGGAACTCCCGAGTTTAGGAACGAGTTACGAAACAGCCGAGTTAGGAAACGAGTTCGTATTCGTGGACTCAGTGGAAGGCTGGCTTTATTCTTACCCATGGTATAACAGAGTCAATAATGCAGATCACCAAGTACAAGAGGATTATGGATTCTTCAAAGAACAGATTTTAATGGCGGATTATACAGACACTTTAATTCCATCTTCAACTTTCGAAGCTTTCTTATGGCAAAATTAA | 777 | 52.77 | METESRILNPSPPPSPSSSGSLSTVPDHHPSSSSSSSAVESNRKRGKRPRENNNNNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGTAAILNFPELAHHFPRPASSSPRDVQAAAAKAAAMEIPTPSLFSSSSSASSSSSSSSALCPSSPEELSEILELPSLGTSYETAELGNEFVFVDSVEGWLYSYPWYNRVNNADHQVQEDYGFFKEQILMADYTDTLIPSSTFEAFLWQN | 258 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 13807124 | 13807900 | + | ClCG06G009005.1 | Cla06g00895 | 275087 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla06g00895 | 258 | Pfam | AP2 domain | 60 | 110 | IPR001471 | GO:0003700|GO:0006355 | |
Cla06g00895 | 258 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 19 | 257 | - | - | |
Cla06g00895 | 258 | SUPERFAMILY | DNA-binding domain | 61 | 119 | IPR016177 | GO:0003677 | |
Cla06g00895 | 258 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
Cla06g00895 | 258 | CDD | AP2 | 62 | 120 | IPR001471 | GO:0003700|GO:0006355 | |
Cla06g00895 | 258 | Gene3D | AP2/ERF domain | 61 | 119 | IPR036955 | GO:0003700|GO:0006355 | |
Cla06g00895 | 258 | SMART | rav1_2 | 61 | 124 | IPR001471 | GO:0003700|GO:0006355 | |
Cla06g00895 | 258 | ProSiteProfiles | AP2/ERF domain profile. | 61 | 118 | IPR001471 | GO:0003700|GO:0006355 | |
Cla06g00895 | 258 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 19 | 257 | - | - | |
Cla06g00895 | 258 | MobiDBLite | consensus disorder prediction | 20 | 40 | - | - | |
Cla06g00895 | 258 | PRINTS | Ethylene responsive element binding protein signature | 62 | 73 | IPR001471 | GO:0003700|GO:0006355 | |
Cla06g00895 | 258 | PRINTS | Ethylene responsive element binding protein signature | 84 | 100 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla06g00895 | Cla-Chr6:13807124 | Cla11g01484 | Cla-Chr11:28476465 | 2.75E-65 | dispersed | |
Cla11g00204 | Cla-Chr11:2372697 | Cla06g00895 | Cla-Chr6:13807124 | 3.98E-65 | wgd | |
Cla06g00895 | Cla-Chr6:13807124 | Cla09g00162 | Cla-Chr9:1696022 | 1.14E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61278 | PF00847 | AP2 | 2.30E-13 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla06g00895 | K09286 | - | csv:101219745 | 339.732 |