Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00905 ATGGGCAAAACCGATTCAATCAATGGTTTCTCTGATCTTGTTCAACATCCAGATTTCTCCCACTATGTTGAAATTGATCCCACTGGCAGATATGGAAGATACAATGAAATCCTCGGCAAAGGAGCTTCCAAGACAGTTTACAGAGCATTTGACGAGTATGAAGGGATTGAAGTTGCTTGGAACCAGGTCAAACTCTGTAACTTCCTTCAATGCCCTGAAGATCTTGAGAGGCTATACTCTGAGATTCATCTCTTGAAAACATTGAAACATAAGAACATTATGAAATTCTATACTTCTTGGGTCGATACTGCGAATAAGAACATCAACTTTGTAACTGAAATGTTCACTTCTGGGACTTTGAGGCAGTATAGGCTAAAGCATAGGAGAGTTAACATTAGAGCAGTGAAGAGATGGTGTAGACAAATTTTGAGGGGTCTTCACTATCTCCATAGCCAAGACCCCCCTGTGATCCACAGAGATCTCAAGTGTGACAACATTTTTGTTAATGGTAACCAAGGAGAAATTAAAATTGGAGACCTTGGTCTTGCTGCTATCCTCCGGAAATCACATGCTGATCATTGTGTCGGGACACCAGAATTCATGGCTCCTGAAGTATATGAAGAGGCATATAATGAATTGGTAGACATTTATTCTTTTGGGATGTGTGTTTTGGAGATGGTTACGTTTGAATATCCATATAGTGAATGTAATCATCCTGTTCAAATCTATAAGAAAGTAATTTCTGGGAAAAAACCAGCTGCCTTGTATAAAGTGAAGGATCCGAGCATGCGTCAATTCGTCGAGAAATGCTTGGCCCCAGTCTCTTGTAGACTTTCAGCAAGGGAGCTTTTGAGTGACCCTTTTCTCCAAATTGATGATTGTGAAAGCAAGCCAAAAATTTCAGATTCTCGGGGAGAACTGGACGATTTTGCTTCCACAGCACACCCTTTCCTTGAACAAGAAAAAATATTTAACTCAATTAGTTACAGTATAGAGGCCTCAGATGAATGGAGGTGCCGTACAGTTCAGAAGGAACCGGATGGGATCGAACTTTTTGAGGACAATGATAATGACCAATTGGAAAATCTTGATAACAGTATTAAGGGGAAGATAAGAGAAGATGGCAATATTGTTTTAAGACTTAGGATTGCAGATAAAGACGGACATATTCGGAACATATATTTCCCATTTGACACCAAGAATGATACAGCATTAACAGTAGCCACCGAAATGATAGCAGAACTTGATATTACTGACCAAGATGTGATCAAGATAGCTGAAAAAATTGATGGGGAAATTGCTTCCTTGGTACTCGACTGGAAGCCAGGGCCTGCCATTGACGAAACACCCCGTATCTCTTACGATGGTGGCTCTCAAAGCTATAACGTCTCTAATCAACCATCTGTTAATTCTTTAACAGAGAGTAAGCAAAATGGACCAAAACTCTATCAGATTTTAAACTGCAGCACAGAGCAGTTCTTCCTCAAAGCAGATCAGCCTACACAGTCTGTAGTAGAGAGCATACCAAAAGTGTCAAGCCAGCACTATCAGTCAAACTCTGTCCTCCATGAAAACCAAGCTCCTAGTTCTCATAGTTTTAGGCAAAGACATTCTGATGAAAATTACAAGAAAACTGACCAATCAGTTGGATATAACAAAGAAAAAGTACCAGATAACAAAGCCACTGTCATTGATAGAACTTCACTAAGAAGCTTATTGGGTTCCCGATCGCTGTCCACGGTTCCATCCTATTGTGAAGATAAATTTCCCTCTCAAATCCATTGGGAAATTAGATGGCTATGGAATTGA 1809 39.97 MGKTDSINGFSDLVQHPDFSHYVEIDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLCNFLQCPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTANKNINFVTEMFTSGTLRQYRLKHRRVNIRAVKRWCRQILRGLHYLHSQDPPVIHRDLKCDNIFVNGNQGEIKIGDLGLAAILRKSHADHCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPVQIYKKVISGKKPAALYKVKDPSMRQFVEKCLAPVSCRLSARELLSDPFLQIDDCESKPKISDSRGELDDFASTAHPFLEQEKIFNSISYSIEASDEWRCRTVQKEPDGIELFEDNDNDQLENLDNSIKGKIREDGNIVLRLRIADKDGHIRNIYFPFDTKNDTALTVATEMIAELDITDQDVIKIAEKIDGEIASLVLDWKPGPAIDETPRISYDGGSQSYNVSNQPSVNSLTESKQNGPKLYQILNCSTEQFFLKADQPTQSVVESIPKVSSQHYQSNSVLHENQAPSSHSFRQRHSDENYKKTDQSVGYNKEKVPDNKATVIDRTSLRSLLGSRSLSTVPSYCEDKFPSQIHWEIRWLWN 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14489112 14492094 - ClCG06G009100.1 Cla06g00905 275097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00905 602 Gene3D Transferase(Phosphotransferase) domain 1 115 294 - -
Cla06g00905 602 Pfam Protein kinase domain 35 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00905 602 MobiDBLite consensus disorder prediction 515 532 - -
Cla06g00905 602 Gene3D Phosphorylase Kinase; domain 1 18 113 - -
Cla06g00905 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Cla06g00905 602 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 14 602 - -
Cla06g00905 602 ProSiteProfiles Protein kinase domain profile. 32 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00905 602 SMART serkin_6 32 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00905 602 CDD STKc_WNK 30 289 - -
Cla06g00905 602 Gene3D - 375 439 - -
Cla06g00905 602 MobiDBLite consensus disorder prediction 515 553 - -
Cla06g00905 602 SUPERFAMILY Protein kinase-like (PK-like) 35 290 IPR011009 -
Cla06g00905 602 MobiDBLite consensus disorder prediction 533 553 - -
Cla06g00905 602 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 377 432 IPR024678 GO:0004674|GO:0005524
Cla06g00905 602 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 14 602 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00290 Cla-Chr3:3553417 Cla06g00905 Cla-Chr6:14489112 4.35E-165 dispersed
Cla04g00650 Cla-Chr4:20944269 Cla06g00905 Cla-Chr6:14489112 4.72E-145 dispersed
Cla05g00072 Cla-Chr5:738084 Cla06g00905 Cla-Chr6:14489112 4.22E-157 dispersed
Cla06g00582 Cla-Chr6:7111152 Cla06g00905 Cla-Chr6:14489112 0 dispersed
Cla06g00905 Cla-Chr6:14489112 Cla10g00434 Cla-Chr10:5845994 5.31E-125 dispersed
Cla06g01511 Cla-Chr6:28635390 Cla06g00905 Cla-Chr6:14489112 4.41E-11 dispersed
Cla06g00905 Cla-Chr6:14489112 Cla02g01615 Cla-Chr2:30873725 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80634 PF00069 Pkinase 9.20E-50 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00905 K08867 - csv:101222641 1045.42