Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00952 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACCGAAGATGAGATCCTTAAAGCCGCGGTTATGAAATATGGCAAAAACCAATGGGCTCGAATTTCGTCGCTTCTTGTCCGGAAATCTGCTAAGCAGTGCAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAGTCAAAGCCTGCACGTCCTGACCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCGCTACAAAAAAGGAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAACGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAACAGCCCAAATTTCCAACAACAATTGAAGAACTAGAAGGCAAAAGAAGGGTTGATGTAGAGGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAAATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGTAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCGGAGCTGCATCCTTCAGACTTTTCCGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCGATGTTAACACCCTCAGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCATTTGGAATGACTCCAAAAGGAACGCCTATTAGAGATGAGTTACGTATCAATGAAGATATGGACGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCGGCAGGCTTTGCTTAGGAAAAGATCAAAAGTACTACAAAGGGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCGCCTACCCCTATTGAACAGGCTGATGAAATGATAAGAAAGGAACTTCTTGCTTTGTTAGAGCATGATAATGCAAAGTACCCAATTGATGAAAAGGCTAGCAAGGAGAGAAAGAAAGGTTCAAAGCGCACTGGAAATGGACCTACTGCAGTCATCCCCACAATAGATGATTTTGAAGAAACTGTGATGGAAGAGGCCGATTATTTGATAAAGGAAGAGGCCCGGTATCTGTGTGCTGCAATGGGGCATGAAAATGAATCCTTAGATGAATTTGTGGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGGAATGCTTATGGACTTTCGAGCGTTGCTGGAAACCATGAGAAACTAGCGGCCTTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCGCAAATTGAGGCAACTTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGAAGCTCTTCAAAAACAAGAGATATCAGCTGCTTCACACAGAATTAGTGGTATCTGGGAAGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTGCGTTATGGAAATCTTTTGGGGGACTTGGAAAAGATGCAGAAAATCATGGTTGATCTCAAAGCACAGGCACAAAAGGAAGAAGAAATCGCAGCGCAGAGCCGTGCTCTTCAGTTGGCTGAGGCTGAGGCTGAGGCTGATCAAACCGTTGGAGAAAATGCTGATAGTTCTGAAGCCATGTCTGCATCAGTAGCAGTTGATTGTGAAAATTCTGTGCCTGTTACCTCAACCTCCAATGAATTAACAGGTGAACAACTGAACTCGTCCGTGGGACATGAACATGAAACTTCTAATGCCATGGATATCGACACAGAAAAAGAAAGTGTACCGGTGAGCTTGGATATTGGTTTATCTGATAACAAACTACCTTCTACAGTGCGAGAGAATGCATCATTGCCTGACAATGGCTTTGAAGATTATGATAAAAGTCAAACCACTGATGTTCCCTCCCAAGAACTCCCGGGTCCTGTTACAAATGGCACTCCAGATGTGACTGTTACAGTGGAAAATAACATCAGCAACGATTCGGTTGATGGTACAGCTATTGAAAATGTTAAATGTAGGACTGATATCGTCGAGGAAGTCAAAGATGCTGAAACTCAACAGTCTGTGACCGAAACTGAAAATAACTCAGATGTGCATTTGACTAATCTGGATTCTGCTGCACCGGCATCTTCTAATGAGGGTAACGGGGAACTCCCTAGTGGCGAAGGGGAAGCAATGGAATCAAATGTCTAG 3105 44.32 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARRQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKASKERKKGSKRTGNGPTAVIPTIDDFEETVMEEADYLIKEEARYLCAAMGHENESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFEALQKQEISAASHRISGIWEEVQKQKELERTLQLRYGNLLGDLEKMQKIMVDLKAQAQKEEEIAAQSRALQLAEAEAEADQTVGENADSSEAMSASVAVDCENSVPVTSTSNELTGEQLNSSVGHEHETSNAMDIDTEKESVPVSLDIGLSDNKLPSTVRENASLPDNGFEDYDKSQTTDVPSQELPGPVTNGTPDVTVTVENNISNDSVDGTAIENVKCRTDIVEEVKDAETQQSVTETENNSDVHLTNLDSAAPASSNEGNGELPSGEGEAMESNV 1034
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16619062 16636365 - ClCG06G009590.2 Cla06g00952 275144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00952 1034 Gene3D - 5 58 - -
Cla06g00952 1034 MobiDBLite consensus disorder prediction 157 176 - -
Cla06g00952 1034 Coils Coil 167 187 - -
Cla06g00952 1034 Pfam Myb-like DNA-binding domain 10 70 - -
Cla06g00952 1034 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cla06g00952 1034 SMART sant 6 55 IPR001005 -
Cla06g00952 1034 SMART sant 58 105 IPR001005 -
Cla06g00952 1034 Pfam pre-mRNA splicing factor component 407 658 IPR021786 -
Cla06g00952 1034 Coils Coil 514 534 - -
Cla06g00952 1034 MobiDBLite consensus disorder prediction 985 1034 - -
Cla06g00952 1034 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cla06g00952 1034 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 896 - -
Cla06g00952 1034 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cla06g00952 1034 MobiDBLite consensus disorder prediction 832 951 - -
Cla06g00952 1034 MobiDBLite consensus disorder prediction 400 414 - -
Cla06g00952 1034 CDD SANT 10 53 IPR001005 -
Cla06g00952 1034 CDD SANT_CDC5_II 55 106 - -
Cla06g00952 1034 Gene3D - 59 114 - -
Cla06g00952 1034 MobiDBLite consensus disorder prediction 597 612 - -
Cla06g00952 1034 MobiDBLite consensus disorder prediction 213 234 - -
Cla06g00952 1034 MobiDBLite consensus disorder prediction 839 884 - -
Cla06g00952 1034 PANTHER - 1 896 - -
Cla06g00952 1034 MobiDBLite consensus disorder prediction 382 421 - -
Cla06g00952 1034 MobiDBLite consensus disorder prediction 597 621 - -
Cla06g00952 1034 MobiDBLite consensus disorder prediction 927 951 - -
Cla06g00952 1034 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cla06g00952 1034 MobiDBLite consensus disorder prediction 110 150 - -
Cla06g00952 1034 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cla06g00952 1034 Coils Coil 799 832 - -
Cla06g00952 1034 MobiDBLite consensus disorder prediction 991 1021 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00952 K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 - csv:101206265 1758.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00952 Cla-Chr6:16619062 Cla10g02008 Cla-Chr10:35889665 8.55E-11 dispersed
Cla06g00952 Cla-Chr6:16619062 Cla05g02461 Cla-Chr5:36070004 2.87E-13 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla06g00952 . 1 818 MYB-Related Transcription Factor Family AT1G09770 77.6 0.0e+00 1208.7
Cla05g01516 . 385 898 MYB-Related Transcription Factor Family AT3G18100 51.6 4.6e-144 508.8
Cla10g00707 . 59 333 MYB-Related Transcription Factor Family AT3G18100 56.0 3.2e-89 326.6
Cla05g01516 . 385 898 MYB-Related Transcription Factor Family AT3G18100 51.6 4.6e-144 508.8
Cla10g00707 . 59 333 MYB-Related Transcription Factor Family AT3G18100 56.0 3.2e-89 326.6
Cla06g00952 . 1 818 MYB-Related Transcription Factor Family AT1G09770 77.6 0.0e+00 1208.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61281 PF11831 Myb_Cef 1.80E-58 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00952 Cla_Chr06 FPKM 7.416736 7.959717 6.816577 7.943508 5.281954 7.028572 6.687186 14.407501 15.398933 13.930833
Cla06g00952 Cla_Chr00 FPKM 0.0 2.496845 0.0 0.0 0.0 0.0 0.0 0.509306 1.68101 0.854019
Cla06g00952 Cla_Chr00 FPKM 1.144251 1.346499 1.166205 1.364867 0.500841 0.663959 0.161077 1.785468 1.662147 2.158652