Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla06g00960 | ATGAAGGAGGAAGGAGAGTGTTTTGAAGAGCAGCTTGTAATACAACAATTCCAAACGATGCAGCAAAACGGTGACGTTTTTGGAGGAGGAGGGTTTATTTTTCCTGAGGTTTCTCCGTTGATGTTTCCGGCCACAACCGTGCATCAAGTCCACGGCTTCAACCCGTTTTCTAATCCGACGATCCTAGACCACCATGACTCGTTTATCTCGCCGCTGCAACCGCCAGCCTCCTATGGCAGTTTCTTCAACAGAAGAAATGCTTCGTCTCTGCAGTTCCCTCCTTACGATAATGTTGGTTGTGCTCCATTTGAGCTGACCAAGATGACCGCTCAAGAAATAATGGACGCCAAAGCACTTGCAGCCTCTAAAAGCCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAATAATCATCTTGCTAAGTTACGAAGCTTACTCCCAAACACCACTAAAACCGACAAGGCGTCATTGCTAGCAGAAGTAATCCAACATGTGAAAGAGCTGAAACGACAGACGACGTTGATAGCCGATGTAAGTCTGCTGCCGACGGAGCTGGACGAGCTATCGGTGGATGTCGATGCGTCCGACGAGGACGGGAAGTCTGTGATCAAAGCTTCGTTTTGTTGTGAGGACAGGTCAGATCTTTTGCCACAAATCATCAAAACCCTAAAATCCCTCCACTTGAGAACTTTAAAAGCAGAGATCACGACGCTCGGCGGCCGCGTAAGAAACGTATTGTTCATCACCAGCGATGACGACTCCTCCAACGACCAACAAGATCAGGCTCAACAACACCAACACCACCAATACAGCATCAGTTCCATTCAAGAAGCCCTAAAGGGCGTGATGGAAAAGGTTTGTAGCGAAGACCAGTCGTCTTCAGGCAGCATTAAAAGACAAAGGACCAATAATCACAACAACATCAATATCATCCAACACAGATCTTTCTAG | 954 | 46.86 | MKEEGECFEEQLVIQQFQTMQQNGDVFGGGGFIFPEVSPLMFPATTVHQVHGFNPFSNPTILDHHDSFISPLQPPASYGSFFNRRNASSLQFPPYDNVGCAPFELTKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTTLIADVSLLPTELDELSVDVDASDEDGKSVIKASFCCEDRSDLLPQIIKTLKSLHLRTLKAEITTLGGRVRNVLFITSDDDSSNDQQDQAQQHQHHQYSISSIQEALKGVMEKVCSEDQSSSGSIKRQRTNNHNNINIIQHRSF | 317 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 18618655 | 18619993 | + | ClCG06G009690.1 | Cla06g00960 | 275152 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla06g00960 | 317 | Pfam | Helix-loop-helix DNA-binding domain | 123 | 169 | IPR011598 | GO:0046983 | |
| Cla06g00960 | 317 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 91 | 309 | - | - | |
| Cla06g00960 | 317 | Gene3D | - | 115 | 175 | IPR036638 | GO:0046983 | |
| Cla06g00960 | 317 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 120 | 169 | IPR011598 | GO:0046983 | |
| Cla06g00960 | 317 | MobiDBLite | consensus disorder prediction | 291 | 317 | - | - | |
| Cla06g00960 | 317 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 91 | 309 | IPR045847 | GO:0003700|GO:0006355 | |
| Cla06g00960 | 317 | SMART | finulus | 126 | 175 | IPR011598 | GO:0046983 | |
| Cla06g00960 | 317 | CDD | bHLH_AtAIG1_like | 115 | 194 | - | - | |
| Cla06g00960 | 317 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 124 | 174 | IPR036638 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g02332 | Cla-Chr5:34914819 | Cla06g00960 | Cla-Chr6:18618655 | 8.55E-89 | dispersed | |
| Cla06g00960 | Cla-Chr6:18618655 | Cla10g01302 | Cla-Chr10:27943059 | 8.95E-52 | dispersed | |
| Cla06g00960 | Cla-Chr6:18618655 | Cla08g01166 | Cla-Chr8:24533003 | 5.73E-40 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61282 | PF00010 | HLH | 2.10E-12 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla06g00960 | - | - | vvi:100250878 | 329.717 |