Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01016 ATGGATCACAATCACTGCAATGGAAACTCTGATTCTCATATCAAAATACCAAAAATCAAGTTCACAAAGCTCTTCATCAATGGACAATTCGTTGACTCAATTTCAGGGAAAACTTTTGAGACCATAGATCCGAGAACCGAGGAGGTTATAACGACGGTCGCCGCTGGGGACAAACAAGACGTTGATTTGGCCGTGAAAGCCGCCCGTGAAGCCTTCGATCATGGCCCTTGGCCCCGCATGTCCGGCGCCGAGAGGGGCAGGATAATGATGAAACTAGCGGAATTGATAGATGAACACATGGAGGAATTAGCAGCGTTGGATACGATCGACGCTGGAAAATCGTTTCTAATGGGAAAGATCGTAGATATACCGGGGGCTGCAAATACGCTACGGTACTACGCAGGAGCAGCGGATAAATTCCACGGCGAAGTATTGAAAATGGCTAAACCGCTTCACGGTTACACGTTACTTGAGCCTATTGGAGTGGTGGGTCACATCATACCGTGGAATTTTCCGACGACCATGTTCTGGTTGAAAGTCAGCCCAGCGTTAGCTGCCGGCTGCACCATGATCGTCAAACCGGCCGAACAAACCCCTCTCTCCGCCCTCTTCTACGCCCATCTCGCCAAATTGGTCCGTCCTGCTGGTATACCAGATGGAGTTCTGAACGTGGTGACTGGATATGGACCGACGGCAGGGTCAGGCATTGCGTCCCACATGGACATTGACAAGGTGAGCTTCACGGGATCAACTAAGGTGGGAAGGCTGGTAATGCAGGCAGCAAGTGGCAGTAATCTGAAGCAAGTGTCCTTGGAATTAGGAGGCAAATCACCCCTTCTAGTCTTTGATGATGCAGATCTGGACAAAGCAGTTGATCTTGCTCTCCTAGCTATTTTTTATAACAAGGGGGAAATTTGCGTGGCTGGCTCCCGGGTTTTGGTTCAAGAAGGGATATACGACGAATTCGTGAAAAAGATTACTGAAAAGGTCAAATCTTGGGTTGTGGGAGACCCTTTTGATCCTAAAGTTAAATATGGACCCCAGGTGGACAAAAAGCAAATGGATAAAATTCTGAAATACATAGAACACGGTAAAAAGGAAGGGGCAACATTGGTTACTGGCGGCAAGCGTATAGGCGACGTGGGGTATTACGTTGAGCCCACAATCTTCACAAATGTCAAGGAAGACTCACTAATTGCCCAGGACGAAATATTCGGCCCCGTCCTCTCAGTCATAAAATTCAAGACAATTGAAGACGGAATAAGGAGTGCAAACAACACCAAGTACGGGCTAGCAGCTGGGATAGTGACGAACAGCTTAGACATAGCGAACACAGTGTCGAGGTCGATTCGAGCTGGTACGATTTGGATAAATTGTTACTTCGCTTTTGACCCTAGTTGCCCATTTGGCGGGTACAAGGCCAGTGGATTCGGAAGAGACTCTGGAATGCACGCTATCCAAAAGTATCTTCAAACTAAATCTGTTGTCATTCCTTTGGTTAACACTCCTTGGCTTTGA 1518 47.56 MDHNHCNGNSDSHIKIPKIKFTKLFINGQFVDSISGKTFETIDPRTEEVITTVAAGDKQDVDLAVKAAREAFDHGPWPRMSGAERGRIMMKLAELIDEHMEELAALDTIDAGKSFLMGKIVDIPGAANTLRYYAGAADKFHGEVLKMAKPLHGYTLLEPIGVVGHIIPWNFPTTMFWLKVSPALAAGCTMIVKPAEQTPLSALFYAHLAKLVRPAGIPDGVLNVVTGYGPTAGSGIASHMDIDKVSFTGSTKVGRLVMQAASGSNLKQVSLELGGKSPLLVFDDADLDKAVDLALLAIFYNKGEICVAGSRVLVQEGIYDEFVKKITEKVKSWVVGDPFDPKVKYGPQVDKKQMDKILKYIEHGKKEGATLVTGGKRIGDVGYYVEPTIFTNVKEDSLIAQDEIFGPVLSVIKFKTIEDGIRSANNTKYGLAAGIVTNSLDIANTVSRSIRAGTIWINCYFAFDPSCPFGGYKASGFGRDSGMHAIQKYLQTKSVVIPLVNTPWL 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21540909 21544556 + ClCG06G010280.1 Cla06g01016 275208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01016 505 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 271 278 IPR029510 GO:0016491
Cla06g01016 505 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 5 505 - -
Cla06g01016 505 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 26 493 IPR016162 GO:0016491
Cla06g01016 505 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 299 310 IPR016160 GO:0016491
Cla06g01016 505 Pfam Aldehyde dehydrogenase family 31 495 IPR015590 GO:0016491
Cla06g01016 505 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 275 464 IPR016163 GO:0016620
Cla06g01016 505 PANTHER DEHYDROGENASE, PUTATIVE-RELATED 5 505 - -
Cla06g01016 505 SUPERFAMILY ALDH-like 16 501 IPR016161 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00431 Cla-Chr6:5264023 Cla06g01016 Cla-Chr6:21540909 6.35E-67 dispersed
Cla06g01016 Cla-Chr6:21540909 Cla06g01654 Cla-Chr6:30056618 0 dispersed
Cla09g00097 Cla-Chr9:955896 Cla06g01016 Cla-Chr6:21540909 1.36E-32 dispersed
Cla06g01016 Cla-Chr6:21540909 Cla02g01637 Cla-Chr2:31170876 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01016 K12355 - csv:101219029 914.064