Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01018 ATGGGTTCACCAAAAACTGGACAACATGTGAGCTTTAATGCTCCGAGGCCATTTGGGCACAGGCTGAAATCGGATATGAAAGAGACGTTTTTCCCTGATGATCCGTTCAGACAGTTTCGAAATGAAAGAGACGCAATACAAAGAGTGAAAAAGGGGTTCCAATATTTCATACCCATATTGGAATGGTTTCCCAAATACAATTTGAATATGTTTAAGTATGATTTGCTTGCTGGTATTACCATTACCAGCCTTGCTATTCCTCAAGGCATTAGTTATGCCAAACTCGCCGTCCTCCCTCCCATTATCGGCCTCTATTCGAGCTTCGTTCCGCCACTTGTGTACGCAGTGTTTGGAAGCTCAAAGCATCTGGCGGTGGGAACGGTGGCTGCATGTTCGTTGCTGATATCAGAAATTATTGGAGAAGTGGCTTCACCGGAAGAAGAACCCACATTGTATCTCCACTTGGTTTTCACCGCCACTTTTATCACCGGCATGATGCAGGCTGCGTTAGGCTTTCTAAGATTGGGAATTTTGGTGGATTTCTTATCGCACTCAACAATCCTTGGGTTTATGGGAGGAACGGCTGTGATCATTTCCCTTCAACAACTAAAAGGCATATTTGGACTGACTCATTTCACCTCTAAAACTGACGTTTATTCCGTACTTCATGCCGTTTTCTCCCTTAGAAAAGAGTGGAAATGGCAAAGTGCTGTGGTGGGCATCGTTTTCCTTGTATTCCTCCAGTTTACTCGCTACTTGAGAAACAGAAACCCGAAGCTATTTTGGGTGTCAGCGATGGCTCCCATGGTGACTGTAATAATAGGGTGTTTGTTTGCATATTTCATCAATGGAACTCAGCATGGAATCTTAACTGTGGGTCATTTGAGCAAAGGAATAAACCCTCTTTCTATTCACTTCTTGAACTTTGACTCTAAATATTTATCAGCTGTGGTACAAGCTGGGTTGATCACTGGCCTTGTCGCTATGGCGGAAGGAATAGCAATTGGTCGGAGCTTTGCAATTATGAAAAATGAACAAATCGATGGCAATAAAGAGATGATAGCTTTTGGTTTGATGAACATAGTGGGATCTTTCACTTCCTGCTACTTAACCACTGGGCCATTCTCAAAGACTGCAGTGAACTTCAATGCTGGGTGTAGGACAGCAATGTCAAACATAGTTATGGCAATCTTCATGGCTCTCACCCTCCTCTTTCTAGCTCCTCTCTTCAGCTACACACCTCTTGTAGCCCTTGCTGCCATTATCATGTCCGCCATGCTTGGTCTCATCAAATATGATGAAATGTATCATCTTCTCAAAGTCGACAAATTCGATTTCTGCATTTGTATGGCAGCTTTCTTGGGTGTTGCCTTCTTAAGCATGGATGTCGGAATCATGCTTTCGGTGGGACTTGCTTTGTTGAGAGCTCTTCTTTACATGGCAAGACCAGCTACTTGCAAGCTCGGGAAAATACCAAACTCCAGTTTGTACAGAGATGTGGAGCAGTATCCTAATGCAACTAGAGCCCATGGAATTATGGTTCTTCAACTTGGTTCCCCTATTTATTATGCCAACTCCAACTACATCAGAGAAAGGATTTTCAGATGGGTTCGTGATGAGCTAGTCGACTCCAAAGATGGATCCGTCGAACATGTACTCTTAGAGTTGAGCGGAGTTACCTCAATCGACATGACAGGGATTGAAACTCTAGTCGAAATCCATAGATCATTACAAGCAAACGGAATTCAGATGGGAATTGTAAACCCAAGAATTGTAGTGATGGAGAAGATGATTGCTTCGGAATTCACAGACACGATCGGGAAAGAGAACATCTATTTGTCGGTAGACGAAGGAGTGGAAAGGTGTAGAGATTTGGTTCCAAAATTAAAGAAAACAGAAACAAATGATCGAAGTTCGAACATGACGACAACGGAGCAACAAGTTTAA 1947 42.99 MGSPKTGQHVSFNAPRPFGHRLKSDMKETFFPDDPFRQFRNERDAIQRVKKGFQYFIPILEWFPKYNLNMFKYDLLAGITITSLAIPQGISYAKLAVLPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLISEIIGEVASPEEEPTLYLHLVFTATFITGMMQAALGFLRLGILVDFLSHSTILGFMGGTAVIISLQQLKGIFGLTHFTSKTDVYSVLHAVFSLRKEWKWQSAVVGIVFLVFLQFTRYLRNRNPKLFWVSAMAPMVTVIIGCLFAYFINGTQHGILTVGHLSKGINPLSIHFLNFDSKYLSAVVQAGLITGLVAMAEGIAIGRSFAIMKNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCRTAMSNIVMAIFMALTLLFLAPLFSYTPLVALAAIIMSAMLGLIKYDEMYHLLKVDKFDFCICMAAFLGVAFLSMDVGIMLSVGLALLRALLYMARPATCKLGKIPNSSLYRDVEQYPNATRAHGIMVLQLGSPIYYANSNYIRERIFRWVRDELVDSKDGSVEHVLLELSGVTSIDMTGIETLVEIHRSLQANGIQMGIVNPRIVVMEKMIASEFTDTIGKENIYLSVDEGVERCRDLVPKLKKTETNDRSSNMTTTEQQV 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21746864 21750033 + ClCG06G010300.1 Cla06g01018 275210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01018 648 SUPERFAMILY SpoIIaa-like 505 623 IPR036513 -
Cla06g01018 648 CDD STAS_SulP_like_sulfate_transporter 503 615 - -
Cla06g01018 648 ProSiteProfiles STAS domain profile. 502 622 IPR002645 -
Cla06g01018 648 TIGRFAM sulP: sulfate permease 58 617 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cla06g01018 648 ProSitePatterns SLC26A transporters signature. 100 121 IPR018045 GO:0008271|GO:0008272
Cla06g01018 648 Pfam Sulfate permease family 71 452 IPR011547 GO:0016021
Cla06g01018 648 PANTHER SULFATE TRANSPORTER 3.5-RELATED 6 630 IPR030316 GO:1902358
Cla06g01018 648 Pfam STAS domain 503 617 IPR002645 -
Cla06g01018 648 Gene3D STAS domain 482 625 IPR036513 -
Cla06g01018 648 PANTHER SULFATE TRANSPORTER 6 630 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00514 Cla-Chr5:4768696 Cla06g01018 Cla-Chr6:21746864 0 dispersed
Cla06g01018 Cla-Chr6:21746864 Cla09g00680 Cla-Chr9:6486960 0 dispersed
Cla06g01018 Cla-Chr6:21746864 Cla06g01019 Cla-Chr6:21779404 0 tandem
Cla06g01018 Cla-Chr6:21746864 Cla09g00202 Cla-Chr9:1986567 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01018 K17471 - csv:116402148 1157.51