Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01019 GGTGTAATGGGTTCACCAAAAACTGGACAACATGTGAGCTTTAATGCTCCGAGGCCATTTGGGCACAGGCTGAAATCGGATATGAAAGAGACGTTTTTCCCTGATGATCCGTTCAGACAGTTTCGAAATGAAAGAGACGCAATACAAAGAGTGAAAAAGGGGTTCCAATATTTCATACCCATATTGGAATGGTTTCCCAAATACAATTTGAATATGTTTAAGTATGATTTGCTTGCTGGTATTACCATTACCAGCCTTGCTATTCCTCAAGGCATTAGTTATGCCAAACTCGCCGTCCTCCCTCCCATTATCGGCCTCTATTCGAGCTTCGTTCCGCCACTTGTGTACGCAGTGTTTGGAAGCTCAAAGCATCTGGCGGTGGGAACGGTGGCTGCATGTTCGTTGCTGATATCAGAAATTATTGGAGAAGTGGCTTCACCGGAAGAAGAACCCACATTGTATCTCCACTTGGTTTTCACCGCCACTTTTATCACCGGCATGATGCAGGCTGCGTTAGGCTTTCTAAGATTGGGAATTTTGGTGGATTTCTTATCGCACTCAACAATCCTTGGGTTTATGGGAGGAACGGCTGTGATCATTTCCCTTCAACAACTAAAAGGCATATTTGGACTGACTCATTTCACCTCTAAAACTGACGTTTATTCCGTACTTCATGCCGTTTTCTCCCTTAGAAAAGAGTGGAAATGGCAAAGTGCTGTGGTGGGCATCGTTTTCCTTGTATTCCTCCAGTTTACTCGCTACTTGAGAAACAGAAACCCGAAGCTATTTTGGGTGTCAGCGATGGCTCCCATGGTGACTGTAATAATAGGGTGTTTGTTTGCATATTTCATCAATGGAACTCAGCATGGAATCTTAACTGTGGGTCATTTGAGCAAAGGAATAAACCCTCTTTCTATTCACTTCTTGAACTTTGACTCTAAATATTTATCAGCTGTGGTACAAGCTGGGTTGATCACTGGCCTTGTCGCTATGGCGGAAGGAATAGCAATTGGTCGGAGCTTTGCAATTATGAAAAATGAACAAATCGATGGCAATAAAGAGATGATAGCTTTTGGTTTGATGAACATAGTGGGATCTTTCACTTCCTGCTACTTAACCACTGGGCCATTCTCAAAGACTGCAGTGAACTTCAATGCTGGGTGTAGGACAGCAATGTCAAACATAGTTATGGCAATCTTCATGGCTCTCACCCTCCTCTTTCTAGCTCCTCTCTTCAGCTACACACCTCTTGTAGCCCTTGCTGCCATTATCATGTCCGCCATGCTTGGTCTCATCAAATATGATGAAATGTATCATCTTCTCAAAGTCGACAAATTCGATTTCTGCATTTGTATGGCAGCTTTCTTGGGTGTTGCCTTCTTAAGCATGGATGTCGGAATCATGCTTTCGGTGGGACTTGCTTTGTTGAGAGCTCTTCTTTACATGGCAAGACCAGCTACTTGCAAGCTCGGGAAAATACCAAACTCCAGTTTGTACAGAGATGTGGAGCAGTATCCTAATGCAACCAGAGCCCATGAAATTATGGTTCTTCAACTTGGTTCCCCTGTTTATTATGCCAACTCCAACTACATCAGAGAAAGGATTTTCAGATGGGTTCGTGATGAGCAAGCCGATCCCAACTATGGATCCGTCGAACATGTACTCCTGGAGTTGAGCGGAGTTACCTCAATCGACATGACAGGGATTGAAACTCTAGTTGAAATCCGCAAATCATTACAAGCAAATGGAATCCAGATGGGAATTGTAAACCCAAGAATTGTAGTGATGGAGAAGATGATAGCTTCGGATTTCACAAACACAATCGGAAAAGAGAACATTTATTTATCGGTGGATGAGGGAGTGGAAAGGTGCAGAGATTTGGTACCGAAATTAAAGCAAACAGAAACAAGTCCTCGAAGTTCGAACATGACGACAATGGAGCAGCAAGTATAA 1953 43.27 GVMGSPKTGQHVSFNAPRPFGHRLKSDMKETFFPDDPFRQFRNERDAIQRVKKGFQYFIPILEWFPKYNLNMFKYDLLAGITITSLAIPQGISYAKLAVLPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLISEIIGEVASPEEEPTLYLHLVFTATFITGMMQAALGFLRLGILVDFLSHSTILGFMGGTAVIISLQQLKGIFGLTHFTSKTDVYSVLHAVFSLRKEWKWQSAVVGIVFLVFLQFTRYLRNRNPKLFWVSAMAPMVTVIIGCLFAYFINGTQHGILTVGHLSKGINPLSIHFLNFDSKYLSAVVQAGLITGLVAMAEGIAIGRSFAIMKNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCRTAMSNIVMAIFMALTLLFLAPLFSYTPLVALAAIIMSAMLGLIKYDEMYHLLKVDKFDFCICMAAFLGVAFLSMDVGIMLSVGLALLRALLYMARPATCKLGKIPNSSLYRDVEQYPNATRAHEIMVLQLGSPVYYANSNYIRERIFRWVRDEQADPNYGSVEHVLLELSGVTSIDMTGIETLVEIRKSLQANGIQMGIVNPRIVVMEKMIASDFTNTIGKENIYLSVDEGVERCRDLVPKLKQTETSPRSSNMTTMEQQV 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21779404 21782559 + ClCG06G010310.1 Cla06g01019 275211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01019 650 ProSiteProfiles STAS domain profile. 504 624 IPR002645 -
Cla06g01019 650 ProSitePatterns SLC26A transporters signature. 102 123 IPR018045 GO:0008271|GO:0008272
Cla06g01019 650 Pfam Sulfate permease family 73 454 IPR011547 GO:0016021
Cla06g01019 650 Pfam STAS domain 505 619 IPR002645 -
Cla06g01019 650 TIGRFAM sulP: sulfate permease 60 619 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cla06g01019 650 Gene3D STAS domain 484 627 IPR036513 -
Cla06g01019 650 SUPERFAMILY SpoIIaa-like 507 625 IPR036513 -
Cla06g01019 650 PANTHER SULFATE TRANSPORTER 3.5-RELATED 8 632 IPR030316 GO:1902358
Cla06g01019 650 CDD STAS_SulP_like_sulfate_transporter 505 617 - -
Cla06g01019 650 PANTHER SULFATE TRANSPORTER 8 632 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cla06g01019 650 Coils Coil 640 650 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01019 Cla-Chr6:21779404 Cla09g00680 Cla-Chr9:6486960 0 dispersed
Cla06g01018 Cla-Chr6:21746864 Cla06g01019 Cla-Chr6:21779404 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01019 K17471 - csv:116402148 1155.58