Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01020 ATGAATCCTAAATCCCATTTGAACCCTCTTTTCCATTTCTCCCTCCTCCTCCTCCTCCTCCTCCTCCGCCTCTCCGCCGCCCTCCCCTCCGTCGGCCATGGCAGTCTCTCCGACGCCGAAGCTCTCTTCATCCGCCACCGCCAGCTTCTTTACTACAGAGACGAGTGGGGTGACCGTGGGGAACAACTCACTGTCGACCCATCTCTTATTTTCGAAAATGAGAGAATTAGAAATGCTTACATTGCACTTCAAGCTTGGAAACTAGCCATTTTATCAGACCCTCTTAATCAAACCGCCAATTGGGTCGGATCTAATGTCTGCAGCTACTTCGGCGTTTTCTGTGCTCCCGCATTGGACAACCCCAAAATCCGTACCGTCGCCGGAATCGATCTCAACCACGGCGACATTGCCGGATACCTCCCTGAAGAGCTCGGTTTGCTTACCGATCTTGCATTGTTCCACATCAACTCTAACAGATTCTGCGGTACTTTACCCCACAAATTCGACCGTCTCAAGTTGCTTTACGAATTGGATCTCAGTAATAACCGCTTCGCCGGCAAGTTCCCCGACGTCGTTCTCAGGCTTCCGACGCTCAAGTTCTTGGATCTGAGGTTTAATGAATTTGAAGGGAATGTACCTAGAGAGCTGTTCGACAAGGATTTGGACGCTATTTTTATTAACCACAACAGGTTTAGATTCGAACTGCCGGATAATTTTGGGAACTCGCCGGTGTCGGTGATTGTGCTTGCGAACAATAAGTTCCATGGATGTGTGCCTTCGAGCTTGGGGAATATGACGAGGCTGAATGAGATTATTCTGATGAACAATGGGCTTAATTCTTGCTTGCCGCCGGAAATTGGGGCGTTGAAGAACTTGACGGTGTTTGATGTTAGTTCGAATGATTTGGTGGGTCCGTTGCCGGAGAGTTTTGGAGGGCTTGTGAGTTTGGAGCAACTTAATGTGGCGAATAATTTTCTTTCTGGGAAGATTCCGGAGAGTATTTGTAAGTTGCCTAAGCTTCAGAACTTTACGTTCTCGAATAACTTCTTCTCCGGTGAGCCACCGGTATGTTTGAGGCTTCCGGATTTCAGTGATCGGAGGAATTGCTTGGCTGGAAGGCCCGGGCAGCGGTCGACTGTGCAATGTAGGACGTTCTTGTCGAGACCTGTTGATTGTAATGCGTTTAAATGCGGTGGTTCATCTTCTGGTTCGCCTTCTACTCCATTTACTCCGCCAGTGGTTTCGCCCTCTTCGCCTCCGTCACCGTCAGGGGCGGCGTCTCCTTCATCGCCGTCTCATTCTCCCAATGCACCACCGGCGCCACCGCTCTCGCCCCATTTTCCTCCTCTGTCGCCACAATCGCCACCGTCGCCGCCTTCTTCCCCATCTACGCCGTCGCAGCCGTCGACACCGTCGTCGCCTTCTTCCCCTTCGACACCGTCGTCGCCTTCTTCCCCTTCGACACCGTCACAGCCGTCGACACCGCCGTCGCCTTCTTCCCCATCGACGCCGTCACAGCCGTCGACACCGCCGTCGCCTTCTTCTCCATCTACCCCTTCAACTCCTTCCACCCCGCCCCATTTTCCCTCTCCATCGGCGCCGTCGCCTTCATCTCCGCCTCGAGGTCATGCTCCCCCGTCATTACCGTCACCTTCATCGCCCCCACAAGGCCATACTCCGCCGTCTGAGCCCTCACCATCATCACCACCCCACGGCCATACTCCGCCGGGTCCACCTTCGTCTGAGCCCTCGCCACCATCGCCGTCACAAGGTCACAATCCGTCGGCTCCTCCTACGTCCGAGCCCTCACCACCATTGCCGCCACAAGGTCACACTCCGCCGGCTCCTCCTTCGCCGTCCGAGCCGTCGCCTTCATCCCCGCCACACGTTAACACTCCGGCCATTCCCCCTTCGCCATCCGAGCCATCACCTTCCTCACCGCCTCAAGGCCATGTTCCTCCGGCGGAGCCTTCTCCTCCAGGAACAGCATCACCACCAGCACCACCATTCCCAGTTTACACTCCGCCTCCGCCACAGTTCCCTGATTTCCCTTCGCCACCATCTACCCAACCTCCGGTCTACTGCCCACGATCCCCATATCCACCATCTCCTCCATCCTACTCCCCAAACCCACCTCTCAATCACCCCAACTCTCCGCCGCCGCCGCCGCTACCAGTTTATCCTCCCCCTCCCCCTGTTCATACAACCCCGTCGCCGCTTCCTCTTCCATGCATACAACCTCCCCCACCAAATGTTAAATATTCAGGACCGCCGCCCCCTCCACCAACACCTTCATCTCCAATTCACTATAATCCCCCACCACCGCCGGTCCATTACCAAGCTCCTCCCTCACCTTCACCACCGGTCAGGGTTTATCCGCCGCCGTCCCCAACTCCCCCACCTCCAGTGGTTTACGAAAGCCCGCCACCGCCAGTCGTCTACCAAAGCCCACCCCCGCCTCCAACTCCAGTATACGGAGGCCCACTGCCACCAATCTACGGAGTTCCGTACGCCTCTCCTCCACCACCACCCTTCTATTAA 2541 55.8 MNPKSHLNPLFHFSLLLLLLLLRLSAALPSVGHGSLSDAEALFIRHRQLLYYRDEWGDRGEQLTVDPSLIFENERIRNAYIALQAWKLAILSDPLNQTANWVGSNVCSYFGVFCAPALDNPKIRTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTLPHKFDRLKLLYELDLSNNRFAGKFPDVVLRLPTLKFLDLRFNEFEGNVPRELFDKDLDAIFINHNRFRFELPDNFGNSPVSVIVLANNKFHGCVPSSLGNMTRLNEIILMNNGLNSCLPPEIGALKNLTVFDVSSNDLVGPLPESFGGLVSLEQLNVANNFLSGKIPESICKLPKLQNFTFSNNFFSGEPPVCLRLPDFSDRRNCLAGRPGQRSTVQCRTFLSRPVDCNAFKCGGSSSGSPSTPFTPPVVSPSSPPSPSGAASPSSPSHSPNAPPAPPLSPHFPPLSPQSPPSPPSSPSTPSQPSTPSSPSSPSTPSSPSSPSTPSQPSTPPSPSSPSTPSQPSTPPSPSSPSTPSTPSTPPHFPSPSAPSPSSPPRGHAPPSLPSPSSPPQGHTPPSEPSPSSPPHGHTPPGPPSSEPSPPSPSQGHNPSAPPTSEPSPPLPPQGHTPPAPPSPSEPSPSSPPHVNTPAIPPSPSEPSPSSPPQGHVPPAEPSPPGTASPPAPPFPVYTPPPPQFPDFPSPPSTQPPVYCPRSPYPPSPPSYSPNPPLNHPNSPPPPPLPVYPPPPPVHTTPSPLPLPCIQPPPPNVKYSGPPPPPPTPSSPIHYNPPPPPVHYQAPPSPSPPVRVYPPPSPTPPPPVVYESPPPPVVYQSPPPPPTPVYGGPLPPIYGVPYASPPPPPFY 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21872214 21874754 + ClCG06G010320.1 Cla06g01020 275212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01020 846 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 4 13 501 - -
Cla06g01020 846 SUPERFAMILY L domain-like 88 361 - -
Cla06g01020 846 MobiDBLite consensus disorder prediction 399 825 - -
Cla06g01020 846 MobiDBLite consensus disorder prediction 409 825 - -
Cla06g01020 846 Pfam Leucine rich repeat 291 348 IPR001611 GO:0005515
Cla06g01020 846 Gene3D Ribonuclease Inhibitor 244 374 IPR032675 -
Cla06g01020 846 Gene3D Ribonuclease Inhibitor 79 243 IPR032675 -
Cla06g01020 846 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 501 - -
Cla06g01020 846 Pfam Leucine rich repeat N-terminal domain 82 114 IPR013210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla06g01020 Cla11g00230 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00515 Cla-Chr5:4779447 Cla06g01020 Cla-Chr6:21872214 1.14E-147 dispersed
Cla06g00329 Cla-Chr6:4222200 Cla06g01020 Cla-Chr6:21872214 3.85E-35 dispersed
Cla06g00331 Cla-Chr6:4232665 Cla06g01020 Cla-Chr6:21872214 3.61E-08 dispersed
Cla06g01020 Cla-Chr6:21872214 Cla07g00233 Cla-Chr7:2591514 3.16E-118 dispersed
Cla08g01588 Cla-Chr8:28569871 Cla06g01020 Cla-Chr6:21872214 4.94E-72 dispersed
Cla05g01996 Cla-Chr5:31740894 Cla06g01020 Cla-Chr6:21872214 7.80E-79 transposed
Cla11g00230 Cla-Chr11:2662401 Cla06g01020 Cla-Chr6:21872214 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01020 - - csv:101220934 724.546