Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01042 ATGGCTGCAGTTTTTTACTTTACCACCCGTCTCCAATTTTTCCTAATTTCATTTTCCCTGCTTCTTCTTCTTCTTCATCTTCATTCTGTCCAGTCTGAGCCCACCGCCGACAAGGCAGCTCTTCTCGATTTCTTGAACAAAACCCCTCATGAGAGTCGCCTTCAATGGAATGCTTCCGCCTCTGCCTGTACTTGGGTTGGAGTTGTCTGTGATGCGACTCAGTCGTTTGTTTTTGCTCTCCGGTTGCCTGGCGTGGGGCTTGTCGGTCCGATTCCGGTTAATACGCTAGGTCGGTTGAATCGGCTCCGAGTTCTCAGTCTCCGGTCGAATAGAATCTCTGGGGAGTTGCCGGCGGATTTTTCTAATTTGGGATTTCTTCGTAGTCTTTATCTTCAGGACAACGAGCTTTCCGGGGATTTTCCGGTGAGTGTGACTCAGTTGACTCGGTTGACTCGACTTGATCTCTCGTCCAACAATTTCTCTGGTTCGATTCCGTTTTCGGTGAATAATCTGACCCATTTGACTGGGCTTTTCTTGGAGAATAATGGGTTTTCGGGTTCTCTGCCGAGTATTCCTGCGGCTGCGACTAGTCTCACGGGATTCAATGTATCGAATAATAAGCTCAATGGATCCATTCCCGAAACCTTATCGAAATTCTCTGCTTCATCTTTCGCCGGAAATTTAGCGCTCTGCGGTGGTCCATTGCCGTCGTGCAACCCGTTTTTTCCCTCCCCTGCTCCATCGCCGACGTCAGCCGTGAAACCCCCACAAGTTCCCGTCGAGAAGAAGTCGAAAAAGCTCTCCATCGCTGCCATTGTCGGAATTGTCGTCGGCGCCGCTTTCTTTGCGTTTATATTGCTGTTTTTGCTCCTGTTTTGTCTCCGGAAGCGCGAGCGGGGGCAGCCGGCGAAGCCGCCGACTACGGTGGTTACTACTCGATCTGTTCCGGCGGAGGCAGGTACATCGTCTTCGAAAGACGACATCACCGGGGGATCAGTGGAGACAGAGAAAAACAGATTAGTGTTCTTCGAAGGTGGAGTTTACAGCTTCGATTTGGAGGACTTGTTGAGAGCTTCGGCGGAGGTTTTAGGAAAAGGAAGCGTCGGGACGTCGTACAAGGCGGTGCTGGAAGAAGGAACCACCGTGGTAGTGAAGAGATTGAAAGATGTGGTGATGACGAAGAAGGAATTCGAAACGCAAATGGAAGCTCTGGGAAATGTGAAACATGAAAATGTGGTTCCTCTCAGAGCTTTCTACTTTTCCAGAGATGAGAAATTGCTTGTTTCCGATTACATGGCCGCCGGCAGCCTTTCTTCTTCCCTTCACGGAAGCAGAGGATCCGGCCGTACGCCACTTGATTGGGACAACCGGATGAAAATAGCATTAAGCGCAGCAAGAGGATTGGCTCACCTCCACGTGTCGGGAAAGCTCGTCCATGGCAATATCAAATCGTCGAACATCCTCCTCCGCCCCAACCACGACGCCGCCGTCTCCGACTTCGGTTTGAACCCTCTCTTCGGCGCTTCGACGCCGCCCAACCGGATCGCCGGGTATCGCGCGCCGGAGGTTGTTGAAACCCGAAAGGTCACTTTCAAGTCCGACGTGTACAGTTTTGGCGTGTTGTTGTTGGAGCTTCTCACCGGGAAATCACCAAATCAAGCGTCGTTGGGTGAAGAAGGGATTGATCTTCCGCGGTGGGTCCAGTCGGTGGTCAGAGAGGAATGGACGGCGGAGGTTTTTGATGTGGAGTTAATGAGGTACCACAATATCGAAGAAGAGATGGTTCAGCTTTTACAAATTGCCATGGCCTGCGTCGCCACCGTGCCGGACCAGCGGCCGTCGATGCAGGAGGTGGTTCGTATGATTGAGGATTTGAACCGGGTGGAGACCGACGAGGGATTACGGCAGTCGTCCGATGACCCATCTAAAGGATCGGACGGCCAGACGCCGCCGCAAGAGTCCAGAACCACCCCACACGGAGCTGGCGGACCACCGTAG 1998 52.35 MAAVFYFTTRLQFFLISFSLLLLLLHLHSVQSEPTADKAALLDFLNKTPHESRLQWNASASACTWVGVVCDATQSFVFALRLPGVGLVGPIPVNTLGRLNRLRVLSLRSNRISGELPADFSNLGFLRSLYLQDNELSGDFPVSVTQLTRLTRLDLSSNNFSGSIPFSVNNLTHLTGLFLENNGFSGSLPSIPAAATSLTGFNVSNNKLNGSIPETLSKFSASSFAGNLALCGGPLPSCNPFFPSPAPSPTSAVKPPQVPVEKKSKKLSIAAIVGIVVGAAFFAFILLFLLLFCLRKRERGQPAKPPTTVVTTRSVPAEAGTSSSKDDITGGSVETEKNRLVFFEGGVYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVMTKKEFETQMEALGNVKHENVVPLRAFYFSRDEKLLVSDYMAAGSLSSSLHGSRGSGRTPLDWDNRMKIALSAARGLAHLHVSGKLVHGNIKSSNILLRPNHDAAVSDFGLNPLFGASTPPNRIAGYRAPEVVETRKVTFKSDVYSFGVLLLELLTGKSPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVATVPDQRPSMQEVVRMIEDLNRVETDEGLRQSSDDPSKGSDGQTPPQESRTTPHGAGGPP 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22563430 22566143 + ClCG06G010530.1 Cla06g01042 275234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01042 665 SUPERFAMILY Protein kinase-like (PK-like) 361 622 IPR011009 -
Cla06g01042 665 Gene3D Ribonuclease Inhibitor 192 241 IPR032675 -
Cla06g01042 665 ProSiteProfiles Protein kinase domain profile. 357 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01042 665 MobiDBLite consensus disorder prediction 640 656 - -
Cla06g01042 665 Pfam Protein kinase domain 360 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01042 665 Pfam Leucine rich repeat N-terminal domain 36 71 IPR013210 -
Cla06g01042 665 SUPERFAMILY L domain-like 56 219 - -
Cla06g01042 665 Gene3D Phosphorylase Kinase; domain 1 325 431 - -
Cla06g01042 665 PANTHER OS05G0588300 PROTEIN 19 643 - -
Cla06g01042 665 MobiDBLite consensus disorder prediction 300 331 - -
Cla06g01042 665 Gene3D Ribonuclease Inhibitor 35 191 IPR032675 -
Cla06g01042 665 PANTHER OS05G0480400 PROTEIN 19 643 - -
Cla06g01042 665 MobiDBLite consensus disorder prediction 626 665 - -
Cla06g01042 665 Gene3D Transferase(Phosphotransferase) domain 1 432 644 - -
Cla06g01042 665 MobiDBLite consensus disorder prediction 305 329 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla06g01042 Cla11g00245 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00205 Cla-Chr1:2033852 Cla06g01042 Cla-Chr6:22563430 0 dispersed
Cla01g00453 Cla-Chr1:4905139 Cla06g01042 Cla-Chr6:22563430 5.44E-12 dispersed
Cla05g00939 Cla-Chr5:9311942 Cla06g01042 Cla-Chr6:22563430 7.19E-180 dispersed
Cla06g01042 Cla-Chr6:22563430 Cla10g01851 Cla-Chr10:34432345 1.88E-143 dispersed
Cla07g00442 Cla-Chr7:5996743 Cla06g01042 Cla-Chr6:22563430 2.20E-08 dispersed
Cla11g00126 Cla-Chr11:1621492 Cla06g01042 Cla-Chr6:22563430 9.15E-115 dispersed
Cla04g01034 Cla-Chr4:25495753 Cla06g01042 Cla-Chr6:22563430 0 transposed
Cla05g01211 Cla-Chr5:13547561 Cla06g01042 Cla-Chr6:22563430 0 transposed
Cla09g01839 Cla-Chr9:36058079 Cla06g01042 Cla-Chr6:22563430 1.51E-92 transposed
Cla10g00877 Cla-Chr10:20051129 Cla06g01042 Cla-Chr6:22563430 3.01E-98 transposed
Cla11g00245 Cla-Chr11:2868483 Cla06g01042 Cla-Chr6:22563430 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80636 PF00069 Pkinase 5.90E-37 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01042 - - cmo:103501524 1132.09