Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01069 ATGGGCAACAATACAGATAATTATTATGGAAACTCCACTCCGAATCTGTCCTCGATTTCAGGCTGTGAAAGCTTCGGGTTTTTGGGAAGAAGATACCCAATGAAAGGGGAAGTACAATTGGAGTCATCAATTGGCCAAAACCCTAGTGACTCTGATCCTCTTCTTGAGAATCAGACCGATTCATCATCCCATGGAACCTCTGATGAAATCAAGGATGAGGATACTGAAGCTGGTTCCATTCCTTGTTGTCGTATTTGCTTAGAGAGCGATGCCGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCGTTAAGGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAAGCCCAATTTCACCTGAAAGTTTCCTTATTTGAGGAAAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGAGATGTTCTCCTTGTATTTATAGCTGTACAAACTTTAATAGCGGCAATGGGTGGTTATGCGTATATAATGGACAAAGATGGGGCATTTAGGAATTCTTTCAGTGATGGATGGGATCGTATTCTGTCCAAACATCCTATTCCATTTTATTATTGTATCGGGGTCCTAGCCTTCTTTGTTCTGCTCGGATTCTTCGGGCTCATACTGCATTGTTCCTCCCTTAATAGTAATGATCCAAGAGTTGCTGGGTGTCACAACTGTTGCTATGGATGGGGAATATTGGATTGTTTCCCTGCATCTATGGAAGCCTGCTTTGCACTTGTTATCGTTTTCGTGGTTATCTTTGTAATTCTTGGCATAGCTTATGGTTTCCTTGCTGCTACAATGGCTATTCAAAGGATCTGGCAAAGGCATTACCACATTCTCACAAAAAGGGAACTGACTAAAGAATATGTGGTGGAGGATCTTCATGGATGTTATACTCCTCCAAAATTGGAACCAGAACATGAACAACACTTGAAAATGCTACAGCTTCTGTAA 1017 41.89 MGNNTDNYYGNSTPNLSSISGCESFGFLGRRYPMKGEVQLESSIGQNPSDSDPLLENQTDSSSHGTSDEIKDEDTEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLKVSLFEENSWRKVKFRLFVARDVLLVFIAVQTLIAAMGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLEPEHEQHLKMLQLL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23193123 23197142 + ClCG06G010750.2 Cla06g01069 275261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01069 338 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 34 338 - -
Cla06g01069 338 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 34 338 - -
Cla06g01069 338 MobiDBLite consensus disorder prediction 38 75 - -
Cla06g01069 338 ProSiteProfiles Zinc finger RING-CH-type profile. 75 140 IPR011016 GO:0008270
Cla06g01069 338 CDD RING_CH-C4HC3_MARCH 83 134 - -
Cla06g01069 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 147 IPR013083 -
Cla06g01069 338 MobiDBLite consensus disorder prediction 40 64 - -
Cla06g01069 338 SUPERFAMILY RING/U-box 81 138 - -
Cla06g01069 338 SMART ringv_2 82 134 IPR011016 GO:0008270
Cla06g01069 338 Pfam RING-variant domain 83 133 IPR011016 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01866 Cla-Chr1:33500348 Cla06g01069 Cla-Chr6:23193123 4.72E-48 dispersed
Cla06g01069 Cla-Chr6:23193123 Cla07g01390 Cla-Chr7:31024191 3.37E-39 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01069 - - csv:101220313 622.083