Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01070 ATGGAGACCATTAGAAACAGAGGGGGTTTCAGGGTTTCTGTTTGTGGCCAAGAAGAGCTCGAACAACTCTCCAGAGATGGCAGTCAGTACAGCCTTACCACTGGAATATTGCCTTCTCTTGGCGCTAGAAGCAATCGCAGAGTTAAGCTCCGGCGCTTTATCATTTCGCCTTATGACCGTCGATACAGGATTTGGGAGACTTTTCTGGTTGTTTTGGTGGTATATACTGCTTGGGTCTCGCCGTTCGAGTTTGGATTCCTTAAGAAACCCCAATCACCACTCTCTGTTACAGACAACGTGGTTAATGGATTTTTTGCTGTGGATATTGTTCTCACATTCTTTGTAGCCTACCTTGATAAAACCACCTATTTACTTGTTGATGAACCCAAGAGGATTGCTCTGAAGTACTCAAGGACATGGCTAATCTTTGATGTCATATCCACAATTCCTTCTGAACTTGCACAGAAGATTTCCCCTTCACCTCTTCGTTCTTATGGATTATTCAACATGCTTCGTCTATGGCGTCTCCGAAGAGTCAGTGCTCTGTTTTCCAGACTGGAGAAAGATAGGAACTATAACTACTTTTGGGTTCGATGTGCCAAACTCGTTTGTGTTACTCTCTTTGCAGTTCACTGTGCTGCATGCTTCTATTATCTTCTTGCTGCTCGTTATCGTGACCCGAAAAATACGTGGATTGGAGCATCTATGGAGAACTTTCTGGAACAAAGTTTGTGGATCAGATATGTCACTTCCGTTTACTGGTCTATCACTACCCTAACCACTGTTGGCTATGGCGACTTGCATCCTGTGAATACAAGGGAGATGATTTTTGACATCTTCTACATGCTTTTCAATCTTGGTTTGACGGCATACTTGATTGGAAATATGACCAACTTAGTTGTCCATGGGACCAGTAGAACCAGAAAATTCAGAGATACCATACAAGCTGCATCTAGTTTCGCCCATAGGAATCAACTTCCTGTTCGTTTGCAAGACCAAATGCTTGCACATTTGTGTCTAAAGTTCAGAACTGACTCTGAGGGATTGCAGCAGCAAGAAACTCTTGATTCCTTGCCTAAAGCAATCCGGTCGAGCATTTCACATTATCTTTTCTATTCTCTAGTAGACAAGGTCTACTTGTTTCGGGGTGTTTCAAATGACCTACTTTTTCAACTGGTTTCAGAAATGAAGGCAGAATATTTTCCTCCAAAAGAAGATGTGATTCTACAAAATGAAGCCCCAACAGATTTCTACATTCTTGTCACGGGTGCTGTGGATTTGCTAGTTCTCAAGAATGGAGTTGAACAGGCAAGTCTGCTTATTGGAGCTCTTAGATTTTTTGAATATTGGCCTGTTGGAGAGGCTAAAACTGGCGATCTTTGTGGAGAGATTGGGGTGTTATGTTATAGACCACAACTGTTTACTGTTCGTACAAAGCGTTTGAGTCAGCTGCTGCGTCTGAATCGGACGGCTTTTCTAAATATTGTTCAATCTAATGTCGGTGATGGGACCATAATCATGAACAATCTTCTTCAGCATTTGAAGGACCTGAAAGACAAGGACCCCATCATGGAAGGAGTTTTGTTGGAGACAGAGAACATGCTGGCTAGAGGCAGAATGGACCTACCACTAAGTCTTTGCTTTGCAACACTTAGAGGAGATGATTTGCTTTTACACCAGCTTTTGAAAAGAGGTCTCGATCCAAACGAATCAGACAATACCGGGAGGACTTCACTTCATATAGCAGCATCAAATGGAAATGAGAACTGTGTGCTTCTATTACTGGACTATGGAGCTGATCCCAATAGTAGAGATTCAGATGGGAGTGTGCCATTATGGGAGGCAATACTAGGTGGCCATGAGGCGGTAGTTCAGCTACTTATAGACAATGGTGCTAACCTTCGATTGGGAGATGTCGGCCACTTTGCGTGTACTGCTGCAGAGCAAAACAACCTCCAGTTGCTCAAGGAGATTATCCGATATGGAGGAGATGTTACGAGTGCCAGGAACAATGGAACGACAGCTTTACATGTTGCTGTTTGTGAGGACAACATTGAGATTGTCAAGTTTCTTCTCAAACAAGGTGCTGATATTGATAAACCAGATGTCCATGGATGGACTCCAAGAGATCTAGCTGACCAACAGGGACATGAAGAAATTAAAATCCTCTTCCAAACAACAAAAGAGTCAAAAACTCAATCTGTCCTTGCAATTCCTGTACCGGAGAAGCAGACAGGGATTCGCTTCCTTGGAAGATTTACAAGTGAGCCTATGATTCGTCCTCAACCTCAGGAAGCAAATGACGGTTCATGGCCGGGTCAATCACGTCCCCGGCGTAGGACTAACAACTTCCATAATTCATTGTTTGGTATCATGTCAGCAGCACACTCAGGGGAGAAAGACATTCCTTTTCCTGATAACCAAACCTGTGGACAGAACTCTCGAACCAACCCTGCAAGGGTGATAATCAGCTGTCCAGAGATCGGCGAAGTTAGCGGGAAGTTGGTGCTGCTTCCAGAAAGCTACAACAAGCTGCTCGAGATTGGTGTCAAGAAATATGGGATTATGGCAACAAAGGTATTGAACAAAGATGGAGCTGCCATTGAAGATATAGAGGTGATTAGGGATGGTGATCATCTTATTTTTGTCAGTGATGGAAGGACCTCATAA 2670 43.45 METIRNRGGFRVSVCGQEELEQLSRDGSQYSLTTGILPSLGARSNRRVKLRRFIISPYDRRYRIWETFLVVLVVYTAWVSPFEFGFLKKPQSPLSVTDNVVNGFFAVDIVLTFFVAYLDKTTYLLVDEPKRIALKYSRTWLIFDVISTIPSELAQKISPSPLRSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLVCVTLFAVHCAACFYYLLAARYRDPKNTWIGASMENFLEQSLWIRYVTSVYWSITTLTTVGYGDLHPVNTREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAHRNQLPVRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQASLLIGALRFFEYWPVGEAKTGDLCGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQHLKDLKDKDPIMEGVLLETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNTGRTSLHIAASNGNENCVLLLLDYGADPNSRDSDGSVPLWEAILGGHEAVVQLLIDNGANLRLGDVGHFACTAAEQNNLQLLKEIIRYGGDVTSARNNGTTALHVAVCEDNIEIVKFLLKQGADIDKPDVHGWTPRDLADQQGHEEIKILFQTTKESKTQSVLAIPVPEKQTGIRFLGRFTSEPMIRPQPQEANDGSWPGQSRPRRRTNNFHNSLFGIMSAAHSGEKDIPFPDNQTCGQNSRTNPARVIISCPEIGEVSGKLVLLPESYNKLLEIGVKKYGIMATKVLNKDGAAIEDIEVIRDGDHLIFVSDGRTS 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23198647 23204378 - ClCG06G010760.2 Cla06g01070 275262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01070 889 ProSiteProfiles cAMP/cGMP binding motif profile. 380 496 IPR000595 -
Cla06g01070 889 ProSiteProfiles Ankyrin repeat region circular profile. 671 702 - -
Cla06g01070 889 PANTHER K+ TRANSPORTER 1-RELATED 6 887 - -
Cla06g01070 889 Gene3D - 63 301 - -
Cla06g01070 889 CDD CAP_ED 380 499 IPR000595 -
Cla06g01070 889 Gene3D - 542 726 IPR036770 -
Cla06g01070 889 ProSiteProfiles Ankyrin repeat profile. 671 703 IPR002110 GO:0005515
Cla06g01070 889 SUPERFAMILY Voltage-gated potassium channels 57 301 - -
Cla06g01070 889 Pfam KHA, dimerisation domain of potassium ion channel 820 882 IPR021789 -
Cla06g01070 889 Gene3D Jelly Rolls 344 520 IPR014710 -
Cla06g01070 889 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla06g01070 889 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla06g01070 889 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla06g01070 889 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla06g01070 889 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla06g01070 889 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla06g01070 889 SUPERFAMILY Ankyrin repeat 545 723 IPR036770 -
Cla06g01070 889 Pfam Ankyrin repeats (3 copies) 646 724 IPR002110 GO:0005515
Cla06g01070 889 Pfam Ankyrin repeats (3 copies) 546 636 IPR002110 GO:0005515
Cla06g01070 889 ProSiteProfiles Ankyrin repeat profile. 574 606 IPR002110 GO:0005515
Cla06g01070 889 MobiDBLite consensus disorder prediction 759 779 - -
Cla06g01070 889 ProSiteProfiles Ankyrin repeat profile. 607 639 IPR002110 GO:0005515
Cla06g01070 889 SUPERFAMILY cAMP-binding domain-like 305 514 IPR018490 -
Cla06g01070 889 SMART cnmp_10 380 511 IPR000595 -
Cla06g01070 889 SMART ANK_2a 607 636 IPR002110 GO:0005515
Cla06g01070 889 SMART ANK_2a 574 603 IPR002110 GO:0005515
Cla06g01070 889 SMART ANK_2a 638 667 IPR002110 GO:0005515
Cla06g01070 889 SMART ANK_2a 671 700 IPR002110 GO:0005515
Cla06g01070 889 SMART ANK_2a 541 570 IPR002110 GO:0005515
Cla06g01070 889 Pfam Cyclic nucleotide-binding domain 400 499 IPR000595 -
Cla06g01070 889 PANTHER POTASSIUM CHANNEL AKT1 6 887 IPR045319 GO:0005249|GO:0006813
Cla06g01070 889 PRINTS Ankyrin repeat signature 575 590 IPR002110 GO:0005515
Cla06g01070 889 PRINTS Ankyrin repeat signature 687 701 IPR002110 GO:0005515
Cla06g01070 889 Pfam Ion transport protein 63 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cla06g01070 889 ProSiteProfiles Ankyrin repeat region circular profile. 574 605 - -
Cla06g01070 889 ProSiteProfiles KHA domain profile. 820 889 IPR021789 -
Cla06g01070 889 ProSiteProfiles Ankyrin repeat region circular profile. 607 638 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00662 Cla-Chr3:7986662 Cla06g01070 Cla-Chr6:23198647 6.34E-08 dispersed
Cla03g00839 Cla-Chr3:11191629 Cla06g01070 Cla-Chr6:23198647 8.16E-124 dispersed
Cla05g01030 Cla-Chr5:10542084 Cla06g01070 Cla-Chr6:23198647 6.64E-163 dispersed
Cla05g01754 Cla-Chr5:29374564 Cla06g01070 Cla-Chr6:23198647 0 dispersed
Cla05g01774 Cla-Chr5:29601163 Cla06g01070 Cla-Chr6:23198647 4.61E-09 dispersed
Cla06g01070 Cla-Chr6:23198647 Cla10g01398 Cla-Chr10:29072186 1.44E-14 dispersed
Cla10g01890 Cla-Chr10:34798988 Cla06g01070 Cla-Chr6:23198647 3.01E-12 dispersed
Cla11g00665 Cla-Chr11:7738343 Cla06g01070 Cla-Chr6:23198647 5.15E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01070 K21867 - csv:101220784 1663.28