Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01077 ATGGAGGATAAGAAAGCCAACTTAATTGCTCTTTTCTTAATCCTCTTTCTCATCCTTCTCCTCATTCTTGCTCGAGTTTTCCTCCAATTTTCCAAGGCTTTTTTCCTTATTTGCGGGATCAATATTTCCCTCACCGCCGCTATCTTGGTCTACATGCTCATCAGACTACGATACAACCGGAGAAGCAAACAGCTCCAGTCTCAGTTAGTTTCCGAAGGTCGAGAGCTTCGGATCGAGTACAGTTTCTTAAGAAAGGTCGCCGGAGTCCCCACCAAGTTCCGGTACAAAGAGCTCGAGGAAGCCACCGACTATTTCAGAGCGTTGATAGGGCAAGGATCTTCCGGTTCCGTCTTCAAAGGAATCCTCAAAGATGGCACTGCAGTAGCCGTCAAGCGGATCGAGGGCGAGAATCGAGGAGACAAAGAGTTTCGAGCGGAGGTATCCGCCATTGCTAGTGTTCAGCATATAAATCTAGTTCGTCTAATTGGTTACTGTACTAATTCATCTGGACCTCGATTTCTCGTCTATGATTTCGTACCGAATGGATCCTTGGATTGCTGGATTTTCCCCAAAAAACCTAAGCACAACAATCGAAATCGTCCTGGCGGTTGCTTGGCTTGGGATCTGAGATATAGAGTCGCCATTGATGTTGCTAAAGCCCTAGCCTACCTTCACCATGATTGCCGATCGAGAATCTTACACCTCGACGTGAAGCCGGAAAACATCCTCCTCGATGAAAATTACAGAGCAACCGTAACGGATTTCGGATTGTCGAAGCTGATGGGGAAAGATGAGAGCCGAATAATGATATCGATGAGAGGAACGAAGGGGTATTTGGCTCCGGAATGGTTATTGGAGAACGGAATTTCAGAGAAATCGGACGTATACAGCTACGGGATGGTTCTTCTGGAACTAGTCGGAGGTCAGAGAAACGTGAGCGTAGTTGAAAATGGAGAAGACAGATCTAAAAGGAAATGGCAGTATTTTCCTCGAATCGTGAGTGCGAAGATGAGGGAAGGGAAATTAATGGAAGCTGTGGATAAAAGGCTATTGGAAACGGGAACGATTGACGAGAGAGAGGTACAGAAACTGGTTTGTGTGGGTTTGTGGTGTATACAAGAGAAGGCGAAGCTGAGGCCGACGATGGCGACGGTGGTGGATATGCTCGAAGGCCGCGTCCCGGTGGAGGAGCCGCCGGATACTGAAATGTTCGTCGTTGATTTGTTGTCTATTGATGAAGAGATGATGAATAGCCATGAGAGGCCGAAGATTGTTCCATTTGGAGAACGGATGAACGACAGAAATCTTCCTTCGTCTTCGTCGACGACGTGTTCGTACGCTATCTCGGTACTCTCCGCCCGGTGA 1365 47.47 MEDKKANLIALFLILFLILLLILARVFLQFSKAFFLICGINISLTAAILVYMLIRLRYNRRSKQLQSQLVSEGRELRIEYSFLRKVAGVPTKFRYKELEEATDYFRALIGQGSSGSVFKGILKDGTAVAVKRIEGENRGDKEFRAEVSAIASVQHINLVRLIGYCTNSSGPRFLVYDFVPNGSLDCWIFPKKPKHNNRNRPGGCLAWDLRYRVAIDVAKALAYLHHDCRSRILHLDVKPENILLDENYRATVTDFGLSKLMGKDESRIMISMRGTKGYLAPEWLLENGISEKSDVYSYGMVLLELVGGQRNVSVVENGEDRSKRKWQYFPRIVSAKMREGKLMEAVDKRLLETGTIDEREVQKLVCVGLWCIQEKAKLRPTMATVVDMLEGRVPVEEPPDTEMFVVDLLSIDEEMMNSHERPKIVPFGERMNDRNLPSSSSTTCSYAISVLSAR 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23380980 23382344 + ClCG06G010840.1 Cla06g01077 275269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01077 454 PANTHER RECEPTOR-LIKE KINASE 1 454 - -
Cla06g01077 454 Gene3D Phosphorylase Kinase; domain 1 66 178 - -
Cla06g01077 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Cla06g01077 454 SUPERFAMILY Protein kinase-like (PK-like) 85 390 IPR011009 -
Cla06g01077 454 Gene3D Transferase(Phosphotransferase) domain 1 179 400 - -
Cla06g01077 454 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Cla06g01077 454 ProSiteProfiles Protein kinase domain profile. 103 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01077 454 CDD STKc_IRAK 109 391 - -
Cla06g01077 454 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 454 - -
Cla06g01077 454 SMART serkin_6 103 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01077 454 Pfam Protein kinase domain 108 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01077 Cla-Chr6:23380980 Cla05g01737 Cla-Chr5:29191450 3.68E-99 dispersed
Cla06g01077 Cla-Chr6:23380980 Cla08g01336 Cla-Chr8:26213653 4.91E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80637 PF00069 Pkinase 1.80E-43 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01077 - - csv:101211041 797.734