Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01110 ATGCGGAGCTTTGTGTGCCACTGGCGGTGTCAGTGTGGGAATGTCAACATTGCAGTGTTGCGAGCGATCAAGACTAGTTTGCTGGTGAAACAACGGGGATCGACTCTGCTATCCCGACGATCGCGGCATCACTCTCCGTCAAGTGAAAGTGTGGACCCCACGGTTCAAACAGTACAACCTGAAAAGATCTATGTAAGCTTTAGATTATTGCTAATAACCAATAGAATGGGACAAACAAAAGCCATGTGGTGGAATTTTGTGACAATTCTAGTAATGGTTTTGCCTGTGAAATCTCAGCTGAGTTTTGGGTTTTACTCAAAGTCTTGTCCTAAAGTTGAGTCCATTGTTAGGTCTACCGTTGAGTCTTATTACAAGGCTGATCCCACCATTGCTGCTGGCTTGCTTAGGCTTCATTTTCATGATTGTTTTGTTCAGGGATGTGATGGTTCAGTATTGATAATGGATGAAAATGCTGAAATAAATGCAGGGCCAAATATGGGGTTAAGAGGCTTTGAAGTAGTTGATGATGCAAAATCCCAACTCGAAAGTTTGTGTCCTGGGGTTGTTTCTTGTGCAGATATTCTTGCTTTGGCTACTCGTGATGCTGTAGACTTGAGTGATGGTCCAAGTTGGTCTGTGCCCACGGGCAGAAGGGACGGGACGATTTCTATGCGTTTCCAGGCGGAAGATCTTCCTTCTCCATTTGAGCCCATCGATAACCACATACAAAAGTTTGCAGAGAAAGGCCTTACTGAAGAAGATCTTGTAACCCTAGTTGGTGGTCACACGATTGGGCAAACGGATTGCCAGCTATTCAGTTACCGTCTACAGAACTTCACAAGCACAGGGAATGCAGACCCAACCATAAGCCCATCGTTCTTGACTGAACTGAGAAGCCTGTGCCCTTTGGATGGGGATCCATTCAGAGGAGTGGCCATGGACAAGGGCAGCCAGTTGAAATTTGACAACAGTTTTTACAAGAACTTGATAGATGGGAATGGGGTTTTGGAGTCTGACCAGAGACTTTGGAGCCACCCTTCAACCAGAGACATTGTGAAGAGATATGCTGGGAATTTAAGGGGATTGTTGGGCCTTAGATTTAACTATGAGTTTAAGAAAGCTATGGTTAAGTTGAGTAGCATTGGTGTTAAGACTGGCACGCAAGGGGAGATTAGAAAAGTGTGTTACCAGTTCAATAAGCAGTGA 1206 44.86 MRSFVCHWRCQCGNVNIAVLRAIKTSLLVKQRGSTLLSRRSRHHSPSSESVDPTVQTVQPEKIYVSFRLLLITNRMGQTKAMWWNFVTILVMVLPVKSQLSFGFYSKSCPKVESIVRSTVESYYKADPTIAAGLLRLHFHDCFVQGCDGSVLIMDENAEINAGPNMGLRGFEVVDDAKSQLESLCPGVVSCADILALATRDAVDLSDGPSWSVPTGRRDGTISMRFQAEDLPSPFEPIDNHIQKFAEKGLTEEDLVTLVGGHTIGQTDCQLFSYRLQNFTSTGNADPTISPSFLTELRSLCPLDGDPFRGVAMDKGSQLKFDNSFYKNLIDGNGVLESDQRLWSHPSTRDIVKRYAGNLRGLLGLRFNYEFKKAMVKLSSIGVKTGTQGEIRKVCYQFNKQ 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23844443 23847348 - ClCG06G011160.1 Cla06g01110 275302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01110 401 Gene3D - 103 399 - -
Cla06g01110 401 PANTHER PEROXIDASE 25-RELATED 84 397 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g01110 401 ProSitePatterns Peroxidases proximal heme-ligand signature. 254 264 IPR019793 -
Cla06g01110 401 ProSiteProfiles Plant heme peroxidase family profile. 99 399 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g01110 401 SUPERFAMILY Heme-dependent peroxidases 99 399 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla06g01110 401 ProSitePatterns Peroxidases active site signature. 131 142 IPR019794 GO:0004601
Cla06g01110 401 PANTHER PEROXIDASE 84 397 - -
Cla06g01110 401 Pfam Peroxidase 116 357 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g01110 401 PRINTS Haem peroxidase superfamily signature 207 219 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g01110 401 PRINTS Haem peroxidase superfamily signature 131 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g01110 401 PRINTS Haem peroxidase superfamily signature 254 269 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g01110 401 PRINTS Haem peroxidase superfamily signature 314 329 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g01110 401 PRINTS Haem peroxidase superfamily signature 189 206 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g01110 401 CDD secretory_peroxidase 99 395 IPR033905 GO:0004601|GO:0042744
Cla06g01110 401 Gene3D Peroxidase, domain 2 232 378 - -
Cla06g01110 401 PRINTS Plant peroxidase signature 188 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g01110 401 PRINTS Plant peroxidase signature 207 222 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g01110 401 PRINTS Plant peroxidase signature 253 265 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g01110 401 PRINTS Plant peroxidase signature 109 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g01110 401 PRINTS Plant peroxidase signature 312 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g01110 401 PRINTS Plant peroxidase signature 328 345 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g01110 401 PRINTS Plant peroxidase signature 133 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g01110 401 PRINTS Plant peroxidase signature 169 182 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g01110 401 PRINTS Plant peroxidase signature 373 386 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01110 Cla-Chr6:23844443 Cla09g01499 Cla-Chr9:29203688 6.14E-135 dispersed
Cla09g02209 Cla-Chr9:39723690 Cla06g01110 Cla-Chr6:23844443 8.41E-73 dispersed
Cla06g01108 Cla-Chr6:23823089 Cla06g01110 Cla-Chr6:23844443 1.26E-164 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01110 K00430 - csv:101214998 595.119